RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 STX16-NPEPL1H3BU86 382 aa21.54■■□□□ 1.04
UPF3A-202ENST00000375299 RNASEH2AO75792 299 aaKnown RBP21.54■■□□□ 1.04
UPF3A-202ENST00000375299 PIGNO95427 931 aa21.54■■□□□ 1.04
UPF3A-202ENST00000375299 TGFB3P10600 412 aa21.54■■□□□ 1.04
UPF3A-202ENST00000375299 ABCG1P45844 678 aa21.54■■□□□ 1.04
UPF3A-202ENST00000375299 GTF2A2P52657 109 aa21.54■■□□□ 1.04
UPF3A-202ENST00000375299 SOWAHAQ2M3V2 549 aa21.54■■□□□ 1.04
UPF3A-202ENST00000375299 EFCAB12Q6NXP0 572 aa21.54■■□□□ 1.04
UPF3A-202ENST00000375299 MIPOL1Q8TD10 442 aa21.54■■□□□ 1.04
UPF3A-202ENST00000375299 EVPLQ92817 2033 aa21.54■■□□□ 1.04
UPF3A-202ENST00000375299 MOCOSQ96EN8 888 aa21.54■■□□□ 1.04
UPF3A-202ENST00000375299 MRPL45Q9BRJ2 306 aaKnown RBP21.54■■□□□ 1.04
UPF3A-202ENST00000375299 HAUS8Q9BT25 410 aa21.54■■□□□ 1.04
UPF3A-202ENST00000375299 CDYLQ9Y232 598 aa21.54■■□□□ 1.04
UPF3A-202ENST00000375299 SNX9Q9Y5X1 595 aa21.54■■□□□ 1.04
UPF3A-202ENST00000375299 IMPDH2P12268 514 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 ZNF26P17031 533 aaPredicted RBP21.53■■□□□ 1.04
UPF3A-202ENST00000375299 CCR10P46092 362 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 ADARP55265 1226 aaKnown RBP21.53■■□□□ 1.04
UPF3A-202ENST00000375299 OLIG2Q13516 323 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 LIPMQ5VYY2 423 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 EEPD1Q7L9B9 569 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 ZBTB26Q9HCK0 441 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 RCOR3Q9P2K3 495 aaPredicted RBP21.53■■□□□ 1.04
UPF3A-202ENST00000375299 ZNF638Q14966 1978 aaKnown RBP21.53■■□□□ 1.04
UPF3A-202ENST00000375299 VAPBO95292 243 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 APOA4P06727 396 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 GRIA4P48058 902 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 NSUN2Q08J23 767 aaKnown RBP eCLIP21.53■■□□□ 1.04
UPF3A-202ENST00000375299 PRKAA1Q13131 559 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 PDK1Q15118 436 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 HSDL1Q3SXM5 330 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 TMEM198Q66K66 360 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 ZYG11AQ6WRX3 759 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 PLPPR4Q7Z2D5 763 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 APOBEC3FQ8IUX4 373 aaKnown RBP21.53■■□□□ 1.04
UPF3A-202ENST00000375299 RBM12BQ8IXT5 1001 aaKnown RBP21.53■■□□□ 1.04
UPF3A-202ENST00000375299 CEP70Q8NHQ1 597 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 RDH11Q8TC12 318 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 DIS3LQ8TF46 1054 aaKnown RBP21.53■■□□□ 1.04
UPF3A-202ENST00000375299 SLC16A10Q8TF71 515 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 ACE2Q9BYF1 805 aaPredicted RBP21.53■■□□□ 1.04
UPF3A-202ENST00000375299 IL22Q9GZX6 179 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 ACSS2Q9NR19 701 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 VTI1BQ9UEU0 232 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 A0A0G2JMZ2 1700 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 LRRC37A2A6NM11 1700 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 SRCAPQ6ZRS2 3230 aa21.53■■□□□ 1.04
UPF3A-202ENST00000375299 A0A1B0GTW7 788 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 ZCWPW2A0A1B0GU75 182 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 SOWAHBA6NEL2 793 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 TIMM44O43615 452 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 ZNF23P17027 643 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 MGAT5BQ3V5L5 792 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 ARL13AQ5H913 290 aaPredicted RBP21.52■■□□□ 1.04
UPF3A-202ENST00000375299 NXNQ6DKJ4 435 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 TMEM135Q86UB9 458 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 CNTD1Q8N815 330 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 CPB2Q96IY4 423 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 RSL24D1Q9UHA3 163 aaKnown RBP21.52■■□□□ 1.04
UPF3A-202ENST00000375299 ZDHHC2Q9UIJ5 367 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 FZD10Q9ULW2 581 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 TRIM38O00635 465 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 TFEBP19484 476 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 PRKAA2P54646 552 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 SULT2A1Q06520 285 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 ITGA7Q13683 1181 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 FRG1Q14331 258 aaKnown RBP21.52■■□□□ 1.04
UPF3A-202ENST00000375299 NUP93Q8N1F7 819 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 KLHL23Q8NBE8 558 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 CCNYQ8ND76 341 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 TSPAN14Q8NG11 270 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 EME1Q96AY2 570 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 TMA16Q96EY4 203 aaKnown RBP21.52■■□□□ 1.04
UPF3A-202ENST00000375299 NFKBIZQ9BYH8 718 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 RNF11Q9Y3C5 154 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 HES2Q9Y543 173 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 NME7Q9Y5B8 376 aa21.52■■□□□ 1.04
UPF3A-202ENST00000375299 SLCO1B7G3V0H7 640 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 H0YJX3 145 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 TK2O00142 265 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 ARIH2O95376 493 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 CSE1LP55060 971 aaKnown RBP21.51■■□□□ 1.03
UPF3A-202ENST00000375299 TXNL4AP83876 142 aaKnown RBP21.51■■□□□ 1.03
UPF3A-202ENST00000375299 PPIDQ08752 370 aaKnown RBP21.51■■□□□ 1.03
UPF3A-202ENST00000375299 DPYSQ14117 519 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 CYTH1Q15438 398 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 AMHR2Q16671 573 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 FAM187BQ17R55 369 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 STRADAQ7RTN6 431 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 MARK4Q96L34 752 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 CCT7Q99832 543 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 TASP1Q9H6P5 420 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 VANGL2Q9ULK5 521 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 CITO14578 2027 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 FZD9O00144 591 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 PHKA2P46019 1235 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 MPP3Q13368 585 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 IL23RQ5VWK5 629 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 PID1Q7Z2X4 250 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms