RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CHUKO15111 745 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 WDPCPO95876 746 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 TIE1P35590 1138 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 FOLR3P41439 243 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 WASP42768 502 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 IL10RAQ13651 578 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 INAQ16352 499 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 IQCCQ4KMZ1 466 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 ENPP6Q6UWR7 440 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 PLPPR4Q7Z2D5 763 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 C14orf80Q86SX3 495 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 COMMD2Q86X83 199 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 TRIML2Q8N7C3 387 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 OR10H5Q8NGA6 315 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CXorf38Q8TB03 319 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 BRSK1Q8TDC3 778 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 BRI3BPQ8WY22 251 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 ING5Q8WYH8 240 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 MUCL1Q96DR8 90 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 DHTKD1Q96HY7 919 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 RILPQ96NA2 401 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CSPG4P5Q96PW8 444 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 PDCD2LQ9BRP1 358 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 FDXACB1Q9BRP7 624 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 MIEF1Q9NQG6 463 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 INTS13Q9NVM9 706 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 KCNK4Q9NYG8 393 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 IP6K2Q9UHH9 426 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 AAR2Q9Y312 384 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 ZNF541Q9H0D2 1346 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 EDDM13A0A1B0GTR0 161 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CFAP73A6NFT4 308 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 SLC31A1O15431 190 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 TM7SF2O76062 418 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 SNUPNO95149 360 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 ADH5P11766 374 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 DRD2P14416 443 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 H2AFXP16104 143 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 SLC7A1P30825 629 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 SCNN1GP51170 649 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 CHRNB3Q05901 458 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 UBE2SQ16763 222 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 HP1BP3Q5SSJ5 553 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 CELF3Q5SZQ8 465 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 CAPRIN2Q6IMN6 1127 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 TMC8Q8IU68 726 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 ADGRF4Q8IZF3 695 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 PTCD2Q8WV60 388 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 NDRG1Q92597 394 aaKnown RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 SCLYQ96I15 445 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 TAAR1Q96RJ0 339 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 MYOCQ99972 504 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 SGK2Q9HBY8 427 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 FAM105AQ9NUU6 356 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 FAIMQ9NVQ4 179 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 RSPH14Q9UHP6 348 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 PFDN2Q9UHV9 154 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 ARIH1Q9Y4X5 557 aaPredicted RBP4.17□□□□□ -1.74
USH2A-202ENST00000366942 CDY1Q9Y6F8 540 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 PLXNC1O60486 1568 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 IQANK1A0A1B0GTG1 560 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 C16orf96A6NNT2 1141 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 ZNF891A8MT65 544 aaPredicted RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 EVPLLA8MZ36 301 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 AGPSO00116 658 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 AGRPO00253 132 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 ZBTB14O43829 449 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 FTLP02792 175 aaPredicted RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 TMEM253P0C7T8 217 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 VDRP11473 427 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 MTHFD2P13995 350 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 PLTPP55058 493 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 TNK2Q07912 1038 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 LRRC74AQ0VAA2 488 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 CUL2Q13617 745 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 DDX39BQ13838 428 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 ST3GAL2Q16842 350 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 DCAF12Q5T6F0 453 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 LANCL3Q6ZV70 420 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 CYP4Z1Q86W10 505 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 TDRPQ86YL5 185 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 ZC3H7AQ8IWR0 971 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 PARP9Q8IXQ6 854 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 AGGF1Q8N302 714 aaeCLIP4.16□□□□□ -1.74
USH2A-202ENST00000366942 CCDC33Q8N5R6 958 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 OR4K17Q8NGC6 315 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 DNASE1L2Q92874 299 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 MAML3Q96JK9 1138 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 UBXN10Q96LJ8 280 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 KCNF1Q9H3M0 494 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 YY1AP1Q9H869 796 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 POLR1BQ9H9Y6 1135 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 NUDT5Q9UKK9 219 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 MYO3AQ8NEV4 1616 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 POLR1CO15160 346 aaPredicted RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 ENDOD1O94919 500 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 FARS2O95363 451 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 HLA-EP13747 358 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 PTGS1P23219 599 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 GLRBP48167 497 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms