RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 RAB6BQ9NRW1 208 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 RBM22Q9NW64 420 aaKnown RBP eCLIP9.42□□□□□ -0.9
USP4-202ENST00000351842 E2F8A0AVK6 867 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 EFCAB8A8MWE9 144 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 DCLK1O15075 740 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 SMAD6O43541 496 aaKnown RBP9.41□□□□□ -0.9
USP4-202ENST00000351842 GREM1O60565 184 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 PIAS1O75925 651 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 LUC7L3O95232 432 aaKnown RBP9.41□□□□□ -0.9
USP4-202ENST00000351842 ECEL1O95672 775 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 MT-CYBP00156 380 aaPredicted RBP9.41□□□□□ -0.9
USP4-202ENST00000351842 HOXC13P31276 330 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 COILP38432 576 aaPredicted RBP9.41□□□□□ -0.9
USP4-202ENST00000351842 ARHGEF18Q6ZSZ5 1173 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 ACTRT1Q8TDG2 376 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 NCAPGQ9BPX3 1015 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 DDX50Q9BQ39 737 aaKnown RBP9.41□□□□□ -0.9
USP4-202ENST00000351842 OSBPL2Q9H1P3 480 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 CACNA2D2Q9NY47 1150 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 LMCD1Q9NZU5 365 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 DEC1Q9P2X7 70 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 LIASO43766 372 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 BANF1O75531 89 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 KRT14P02533 472 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 PRKCGP05129 697 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 FCARP24071 287 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 TIE1P35590 1138 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 DGKGP49619 791 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 GAD2Q05329 585 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 SCAPQ12770 1279 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 ZBTB17Q13105 803 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 RUNX3Q13761 415 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 ZNF235Q14590 738 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 MPPE1Q53F39 396 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 HTR3DQ70Z44 454 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 CHPFQ8IZ52 775 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 SMIM14Q96QK8 99 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 NOL6Q9H6R4 1146 aaKnown RBP9.41□□□□□ -0.9
USP4-202ENST00000351842 PHF2O75151 1096 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 ADH1CP00326 375 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 RHOQP17081 205 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 DDX6P26196 483 aaKnown RBP eCLIP9.41□□□□□ -0.9
USP4-202ENST00000351842 CRADDP78560 199 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 SEMA3BQ13214 749 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 KLF1Q13351 362 aaPredicted RBP9.41□□□□□ -0.9
USP4-202ENST00000351842 NOMO1Q15155 1222 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 PON2Q15165 354 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 PTPRRQ15256 657 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 P3H1Q32P28 736 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 EML3Q32P44 896 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 C6orf118Q5T5N4 469 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 CHST9Q7L1S5 443 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 BNIPLQ7Z465 357 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 SLC25A41Q8N5S1 370 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 IPMKQ8NFU5 416 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 NSMCE1Q8WV22 266 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 OSCP1Q8WVF1 389 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 ACOX2Q99424 681 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 PRMT1Q99873 361 aaKnown RBP9.41□□□□□ -0.9
USP4-202ENST00000351842 HPS4Q9NQG7 708 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 RAD54BQ9Y620 910 aa9.41□□□□□ -0.9
USP4-202ENST00000351842 TMEM265A0A087WTH1 108 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 PPP1R12AO14974 1030 aaPredicted RBP9.4□□□□□ -0.9
USP4-202ENST00000351842 BUD23O43709 281 aaKnown RBP9.4□□□□□ -0.9
USP4-202ENST00000351842 CLDN11O75508 207 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 GJA4P35212 333 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 GARSP41250 739 aaKnown RBP9.4□□□□□ -0.9
USP4-202ENST00000351842 SMAD4Q13485 552 aaKnown RBP9.4□□□□□ -0.9
USP4-202ENST00000351842 EIF4EBP2Q13542 120 aaPredicted RBP9.4□□□□□ -0.9
USP4-202ENST00000351842 PDK1Q15118 436 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 SIX1Q15475 284 aaPredicted RBP9.4□□□□□ -0.9
USP4-202ENST00000351842 CCDC70Q6NSX1 233 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 TMEM184AQ6ZMB5 413 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 BEND5Q7L4P6 421 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 JAMLQ86YT9 394 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 HTR3CQ8WXA8 447 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 ATP2A3Q93084 1043 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 NXPE3Q969Y0 559 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 CEP295NLQ96MC4 621 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 FEM1AQ9BSK4 669 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 PHF7Q9BWX1 381 aaPredicted RBP9.4□□□□□ -0.9
USP4-202ENST00000351842 TBC1D14Q9P2M4 693 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 PIAS3Q9Y6X2 628 aa9.4□□□□□ -0.9
USP4-202ENST00000351842 FAM47DPA6NHR8 397 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 ZBTB24O43167 697 aaPredicted RBP9.4□□□□□ -0.91
USP4-202ENST00000351842 NFATC1O95644 943 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 GAS8O95995 478 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 CCNB1P14635 433 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 TPH1P17752 444 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 PSMB4P28070 264 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 CDH4P55283 916 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 UBXN2BQ14CS0 331 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 FYB2Q5VWT5 728 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 CXorf57Q6NSI4 855 aaKnown RBP9.4□□□□□ -0.91
USP4-202ENST00000351842 CASC4Q6P4E1 433 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 Q6ZNB5 142 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 Q6ZVU0 165 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 MFSD6LQ8IWD5 586 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 ARHGAP12Q8IWW6 846 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 KRT222Q8N1A0 295 aa9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms