RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 DCAF4L2Q8NA75 395 aa12.13□□□□□ -0.47
SNCA-202ENST00000345009 TXNDC5Q8NBS9 432 aaKnown RBP12.13□□□□□ -0.47
SNCA-202ENST00000345009 WFDC5Q8TCV5 224 aa12.13□□□□□ -0.47
SNCA-202ENST00000345009 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.13□□□□□ -0.47
SNCA-202ENST00000345009 EZH1Q92800 747 aaPredicted RBP12.13□□□□□ -0.47
SNCA-202ENST00000345009 LMLNQ96KR4 655 aa12.13□□□□□ -0.47
SNCA-202ENST00000345009 CSPG4P5Q96PW8 444 aa12.13□□□□□ -0.47
SNCA-202ENST00000345009 ZNF670Q9BS34 389 aa12.13□□□□□ -0.47
SNCA-202ENST00000345009 MAGEB5Q9BZ81 275 aa12.13□□□□□ -0.47
SNCA-202ENST00000345009 IRF2BPLQ9H1B7 796 aa12.13□□□□□ -0.47
SNCA-202ENST00000345009 PCDH18Q9HCL0 1135 aa12.13□□□□□ -0.47
SNCA-202ENST00000345009 ATP13A1Q9HD20 1204 aa12.13□□□□□ -0.47
SNCA-202ENST00000345009 POLMQ9NP87 494 aaPredicted RBP12.13□□□□□ -0.47
SNCA-202ENST00000345009 AMFRQ9UKV5 643 aa12.13□□□□□ -0.47
SNCA-202ENST00000345009 MMP17Q9ULZ9 603 aa12.13□□□□□ -0.47
SNCA-202ENST00000345009 PPP2R2CQ9Y2T4 447 aa12.13□□□□□ -0.47
SNCA-202ENST00000345009 COL4A2P08572 1712 aa12.13□□□□□ -0.47
SNCA-202ENST00000345009 CACNA1IQ9P0X4 2223 aa12.13□□□□□ -0.47
SNCA-202ENST00000345009 MIA3Q5JRA6 1907 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 ARHGAP42A6NI28 874 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 MIF4GDA9UHW6 222 aaKnown RBP12.12□□□□□ -0.47
SNCA-202ENST00000345009 ZNF487B1APH4 448 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 CBX4O00257 560 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 ZRANB2O95218 330 aaKnown RBP eCLIP12.12□□□□□ -0.47
SNCA-202ENST00000345009 ZFXP17010 805 aaPredicted RBP12.12□□□□□ -0.47
SNCA-202ENST00000345009 ERCC2P18074 760 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 KDELR1P24390 212 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 MSNP26038 577 aaKnown RBP12.12□□□□□ -0.47
SNCA-202ENST00000345009 TAS2R40P59535 323 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 DPYSQ14117 519 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 Q6ZS52 159 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 LRRC49Q8IUZ0 686 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 APCDD1Q8J025 514 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 CAMKK1Q8N5S9 505 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 IL17RCQ8NAC3 791 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 FAM71BQ8TC56 605 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 RBM41Q96IZ5 413 aaKnown RBP12.12□□□□□ -0.47
SNCA-202ENST00000345009 FAM126AQ9BYI3 521 aaPredicted RBP12.12□□□□□ -0.47
SNCA-202ENST00000345009 LZTFL1Q9NQ48 299 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 SALL4Q9UJQ4 1053 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 ERVW-1Q9UQF0 538 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 STON1Q9Y6Q2 735 aa12.12□□□□□ -0.47
SNCA-202ENST00000345009 CACNA1HO95180 2353 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 A0A0D9SEW6 157 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 GOLGA6L9A6NEM1 432 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 PALMO75781 387 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 PAPSS2O95340 614 aaPredicted RBP12.11□□□□□ -0.47
SNCA-202ENST00000345009 KRT1P04264 644 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 EPHX1P07099 455 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 HOXB2P14652 356 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 TFDP2Q14188 446 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 DPYSL3Q14195 570 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 ZNF234Q14588 700 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 CRY1Q16526 586 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 ATP13A4Q4VNC1 1196 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 ANKRD20A8PQ5CZ79 823 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 EGFLAMQ63HQ2 1017 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 TMEM215Q68D42 235 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 TXNRD3NBQ6F5E7 133 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 BZW1Q7L1Q6 419 aaKnown RBP12.11□□□□□ -0.47
SNCA-202ENST00000345009 SFTPA1Q8IWL2 248 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 KATNAL2Q8IYT4 538 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 ATP11CQ8NB49 1132 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 TSTD1Q8NFU3 115 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 TRIM58Q8NG06 486 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 CYB5D2Q8WUJ1 264 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 SORCS1Q8WY21 1168 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 ALG14Q96F25 216 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 CCDC114Q96M63 670 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 ZNF830Q96NB3 372 aaPredicted RBP12.11□□□□□ -0.47
SNCA-202ENST00000345009 GABRG3Q99928 467 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 KCNH6Q9H252 994 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 FBRSQ9HAH7 460 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 CACNA2D2Q9NY47 1150 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 ZNF212Q9UDV6 495 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 FBXO4Q9UKT5 387 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 INTS6Q9UL03 887 aaKnown RBP12.11□□□□□ -0.47
SNCA-202ENST00000345009 HYOU1Q9Y4L1 999 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 PCDHA3Q9Y5H8 950 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 OR51B4Q9Y5P0 310 aa12.11□□□□□ -0.47
SNCA-202ENST00000345009 DOCK4Q8N1I0 1966 aa12.1□□□□□ -0.47
SNCA-202ENST00000345009 TARSL2A2RTX5 802 aaKnown RBP12.1□□□□□ -0.47
SNCA-202ENST00000345009 GRID2IPA4D2P6 1211 aa12.1□□□□□ -0.47
SNCA-202ENST00000345009 RASA4BC9J798 803 aa12.1□□□□□ -0.47
SNCA-202ENST00000345009 RASA4O43374 803 aa12.1□□□□□ -0.47
SNCA-202ENST00000345009 KDELR3O43731 214 aa12.1□□□□□ -0.47
SNCA-202ENST00000345009 RNASEH1O60930 286 aaKnown RBP12.1□□□□□ -0.47
SNCA-202ENST00000345009 APBB3O95704 486 aa12.1□□□□□ -0.47
SNCA-202ENST00000345009 MX2P20592 715 aa12.1□□□□□ -0.47
SNCA-202ENST00000345009 AMPD1P23109 780 aa12.1□□□□□ -0.47
SNCA-202ENST00000345009 HOXA6P31267 233 aa12.1□□□□□ -0.47
SNCA-202ENST00000345009 CTNNA1P35221 906 aaKnown RBP12.1□□□□□ -0.47
SNCA-202ENST00000345009 RECQLP46063 649 aaPredicted RBP12.1□□□□□ -0.47
SNCA-202ENST00000345009 ARSEP51690 589 aa12.1□□□□□ -0.47
SNCA-202ENST00000345009 RWDD2BP57060 319 aa12.1□□□□□ -0.47
SNCA-202ENST00000345009 COPS2P61201 443 aa12.1□□□□□ -0.47
SNCA-202ENST00000345009 CSTF1Q05048 431 aaKnown RBP12.1□□□□□ -0.47
SNCA-202ENST00000345009 SFSWAPQ12872 951 aaKnown RBP12.1□□□□□ -0.47
SNCA-202ENST00000345009 ENPP2Q13822 863 aa12.1□□□□□ -0.47
SNCA-202ENST00000345009 GAS6Q14393 721 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms