RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 TRAF3Q13114 568 aa8.82□□□□□ -1
RTN3-202ENST00000339997 PITRM1Q5JRX3 1037 aa8.82□□□□□ -1
RTN3-202ENST00000339997 MARC1Q5VT66 337 aa8.82□□□□□ -1
RTN3-202ENST00000339997 TTC27Q6P3X3 843 aa8.82□□□□□ -1
RTN3-202ENST00000339997 CARNMT1Q8N4J0 409 aa8.82□□□□□ -1
RTN3-202ENST00000339997 OR7A2PQ8NGA2 310 aa8.82□□□□□ -1
RTN3-202ENST00000339997 ART4Q93070 314 aa8.82□□□□□ -1
RTN3-202ENST00000339997 VMP1Q96GC9 406 aa8.82□□□□□ -1
RTN3-202ENST00000339997 ZFP42Q96MM3 310 aa8.82□□□□□ -1
RTN3-202ENST00000339997 TOR3AQ9H497 397 aa8.82□□□□□ -1
RTN3-202ENST00000339997 TPD52L2O43399 206 aaKnown RBP8.82□□□□□ -1
RTN3-202ENST00000339997 SEC24AO95486 1093 aa8.82□□□□□ -1
RTN3-202ENST00000339997 INSRRP14616 1297 aa8.82□□□□□ -1
RTN3-202ENST00000339997 GMPSP49915 693 aaPredicted RBP8.82□□□□□ -1
RTN3-202ENST00000339997 YWHAZP63104 245 aaKnown RBP8.82□□□□□ -1
RTN3-202ENST00000339997 CDH17Q12864 832 aa8.82□□□□□ -1
RTN3-202ENST00000339997 DDR2Q16832 855 aa8.82□□□□□ -1
RTN3-202ENST00000339997 FNBP1LQ5T0N5 605 aa8.82□□□□□ -1
RTN3-202ENST00000339997 NBPF12Q5TAG4 269 aaPredicted RBP8.82□□□□□ -1
RTN3-202ENST00000339997 RNF43Q68DV7 783 aa8.82□□□□□ -1
RTN3-202ENST00000339997 APLFQ8IW19 511 aaPredicted RBP8.82□□□□□ -1
RTN3-202ENST00000339997 ZFRQ96KR1 1074 aaKnown RBP8.82□□□□□ -1
RTN3-202ENST00000339997 TOR4AQ9NXH8 423 aa8.82□□□□□ -1
RTN3-202ENST00000339997 A2ML1A8K2U0 1454 aa8.82□□□□□ -1
RTN3-202ENST00000339997 CNTNAP2Q9UHC6 1331 aa8.82□□□□□ -1
RTN3-202ENST00000339997 USP31Q70CQ4 1352 aa8.82□□□□□ -1
RTN3-202ENST00000339997 TNS3Q68CZ2 1445 aa8.82□□□□□ -1
RTN3-202ENST00000339997 LACTBL1A8MY62 500 aa8.82□□□□□ -1
RTN3-202ENST00000339997 MAGEB2O15479 319 aa8.82□□□□□ -1
RTN3-202ENST00000339997 DNAJB2P25686 324 aa8.82□□□□□ -1
RTN3-202ENST00000339997 PEX2P28328 305 aa8.82□□□□□ -1
RTN3-202ENST00000339997 TUBP50607 506 aa8.82□□□□□ -1
RTN3-202ENST00000339997 HPCAP84074 193 aa8.82□□□□□ -1
RTN3-202ENST00000339997 EIF2B5Q13144 721 aaKnown RBP8.82□□□□□ -1
RTN3-202ENST00000339997 GLB1LQ6UWU2 654 aa8.82□□□□□ -1
RTN3-202ENST00000339997 OFCC1Q8IZS5 231 aa8.82□□□□□ -1
RTN3-202ENST00000339997 MREGQ8N565 214 aa8.82□□□□□ -1
RTN3-202ENST00000339997 WDR36Q8NI36 951 aaKnown RBP8.82□□□□□ -1
RTN3-202ENST00000339997 ENKURQ8TC29 256 aa8.82□□□□□ -1
RTN3-202ENST00000339997 EZH1Q92800 747 aaPredicted RBP8.82□□□□□ -1
RTN3-202ENST00000339997 B3GNT5Q9BYG0 378 aa8.82□□□□□ -1
RTN3-202ENST00000339997 GLIS2Q9BZE0 524 aaPredicted RBP8.82□□□□□ -1
RTN3-202ENST00000339997 PRDM12Q9H4Q4 367 aa8.82□□□□□ -1
RTN3-202ENST00000339997 A1CFQ9NQ94 594 aaKnown RBP8.82□□□□□ -1
RTN3-202ENST00000339997 RASSF1Q9NS23 344 aa8.82□□□□□ -1
RTN3-202ENST00000339997 ATAD3AQ9NVI7 634 aa8.82□□□□□ -1
RTN3-202ENST00000339997 COMMD8Q9NX08 183 aa8.82□□□□□ -1
RTN3-202ENST00000339997 DDX43Q9NXZ2 648 aaKnown RBP8.82□□□□□ -1
RTN3-202ENST00000339997 PCYOX1Q9UHG3 505 aa8.82□□□□□ -1
RTN3-202ENST00000339997 VPS28Q9UK41 221 aa8.82□□□□□ -1
RTN3-202ENST00000339997 UBQLN1Q9UMX0 589 aaKnown RBP8.82□□□□□ -1
RTN3-202ENST00000339997 COG5Q9UP83 839 aa8.82□□□□□ -1
RTN3-202ENST00000339997 SLC9A8Q9Y2E8 581 aa8.82□□□□□ -1
RTN3-202ENST00000339997 KAT6AQ92794 2004 aa8.82□□□□□ -1
RTN3-202ENST00000339997 SNTNA6NMZ2 147 aa8.82□□□□□ -1
RTN3-202ENST00000339997 FGFR1P11362 822 aa8.82□□□□□ -1
RTN3-202ENST00000339997 RXRBP28702 533 aa8.82□□□□□ -1
RTN3-202ENST00000339997 THPOP40225 353 aa8.82□□□□□ -1
RTN3-202ENST00000339997 PBX1P40424 430 aa8.82□□□□□ -1
RTN3-202ENST00000339997 HNF4AP41235 474 aa8.82□□□□□ -1
RTN3-202ENST00000339997 BCAT1P54687 386 aa8.82□□□□□ -1
RTN3-202ENST00000339997 C1orf186Q6ZWK4 172 aa8.82□□□□□ -1
RTN3-202ENST00000339997 SATL1Q86VE3 508 aa8.82□□□□□ -1
RTN3-202ENST00000339997 CYP4X1Q8N118 509 aa8.82□□□□□ -1
RTN3-202ENST00000339997 CDYL2Q8N8U2 506 aa8.82□□□□□ -1
RTN3-202ENST00000339997 JOSD2Q8TAC2 188 aa8.82□□□□□ -1
RTN3-202ENST00000339997 FBXO32Q969P5 355 aa8.82□□□□□ -1
RTN3-202ENST00000339997 CHID1Q9BWS9 393 aa8.82□□□□□ -1
RTN3-202ENST00000339997 HSD3B7Q9H2F3 369 aa8.82□□□□□ -1
RTN3-202ENST00000339997 PCDH12Q9NPG4 1184 aa8.82□□□□□ -1
RTN3-202ENST00000339997 INVSQ9Y283 1065 aa8.82□□□□□ -1
RTN3-202ENST00000339997 BTBD3Q9Y2F9 522 aa8.82□□□□□ -1
RTN3-202ENST00000339997 LRRC37A3O60309 1634 aa8.82□□□□□ -1
RTN3-202ENST00000339997 NEO1Q92859 1461 aa8.81□□□□□ -1
RTN3-202ENST00000339997 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.81□□□□□ -1
RTN3-202ENST00000339997 CCL22O00626 93 aa8.81□□□□□ -1
RTN3-202ENST00000339997 SIN3BO75182 1162 aa8.81□□□□□ -1
RTN3-202ENST00000339997 LRATO95237 230 aa8.81□□□□□ -1
RTN3-202ENST00000339997 CKMP06732 381 aa8.81□□□□□ -1
RTN3-202ENST00000339997 NUDT17P0C025 328 aa8.81□□□□□ -1
RTN3-202ENST00000339997 AQP1P29972 269 aa8.81□□□□□ -1
RTN3-202ENST00000339997 IL12RB1P42701 662 aa8.81□□□□□ -1
RTN3-202ENST00000339997 ZNF177Q13360 481 aaPredicted RBP8.81□□□□□ -1
RTN3-202ENST00000339997 TP53BP2Q13625 1128 aa8.81□□□□□ -1
RTN3-202ENST00000339997 NCF4Q15080 339 aa8.81□□□□□ -1
RTN3-202ENST00000339997 SAMD4BQ5PRF9 694 aaKnown RBP8.81□□□□□ -1
RTN3-202ENST00000339997 TRIQKQ629K1 86 aa8.81□□□□□ -1
RTN3-202ENST00000339997 HGSNATQ68CP4 663 aa8.81□□□□□ -1
RTN3-202ENST00000339997 ANKS6Q68DC2 871 aa8.81□□□□□ -1
RTN3-202ENST00000339997 EPHX4Q8IUS5 362 aa8.81□□□□□ -1
RTN3-202ENST00000339997 EID3Q8N140 333 aa8.81□□□□□ -1
RTN3-202ENST00000339997 ACE2Q9BYF1 805 aaPredicted RBP8.81□□□□□ -1
RTN3-202ENST00000339997 FAM192AQ9GZU8 254 aa8.81□□□□□ -1
RTN3-202ENST00000339997 BPIFA1Q9NP55 256 aa8.81□□□□□ -1
RTN3-202ENST00000339997 MYOZ2Q9NPC6 264 aa8.81□□□□□ -1
RTN3-202ENST00000339997 XPR1Q9UBH6 696 aa8.81□□□□□ -1
RTN3-202ENST00000339997 KLQ9UEF7 1012 aa8.81□□□□□ -1
RTN3-202ENST00000339997 HACL1Q9UJ83 578 aa8.81□□□□□ -1
RTN3-202ENST00000339997 MAP2P11137 1827 aaKnown RBP8.81□□□□□ -1
RTN3-202ENST00000339997 IQCMA0A1B0GVH7 501 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms