RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 KYQ8NBH2 561 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 OR6P1Q8NGX9 317 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 RAD51AP1Q96B01 352 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 TBC1D20Q96BZ9 403 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ZNF597Q96LX8 424 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 FAM20AQ96MK3 541 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 SYNDIG1Q9H7V2 258 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 AKIP1Q9NQ31 210 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 PRDM11Q9NQV5 511 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 PRKAG2Q9UGJ0 569 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 PFDN2Q9UHV9 154 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 RUVBL2Q9Y230 463 aaKnown RBP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 GJA3Q9Y6H8 435 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 B4E1Z4 1266 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 KLRF2D3W0D1 207 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 STMND1H3BQB6 276 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ARHGAP33O14559 1287 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ATG13O75143 517 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 CFBP00751 764 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 PRKCBP05771 671 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 CYP11B1P15538 503 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 MX2P20592 715 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 CALML3P27482 149 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 CYP2C18P33260 490 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 HIRAP54198 1017 aaPredicted RBP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 WDR4P57081 412 aaKnown RBP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 PURAQ00577 322 aaKnown RBP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 CCDC157Q569K6 752 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 TTC39BQ5VTQ0 682 aaPredicted RBP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 DENND5AQ6IQ26 1287 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ZNF773Q6PK81 442 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ATG14Q6ZNE5 492 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 TMEM151BQ8IW70 566 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 DCP1BQ8IZD4 617 aaKnown RBP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 GUF1Q8N442 669 aaKnown RBP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 FIBCD1Q8N539 461 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ANKFN1Q8N957 763 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 GSTCDQ8NEC7 633 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ABHD11Q8NFV4 315 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 OR6Q1Q8NGQ2 317 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 SETD7Q8WTS6 366 aaKnown RBP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 SLC44A1Q8WWI5 657 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 SLC47A1Q96FL8 570 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 CALML4Q96GE6 196 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 FAM167AQ96KS9 214 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 NPLQ9BXD5 320 aaPredicted RBP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 CLEC4MQ9H2X3 399 aaPredicted RBP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 MMP27Q9H306 513 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 SLC35C2Q9NQQ7 365 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 IGSF5Q9NSI5 407 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 PIH1D1Q9NWS0 290 aaKnown RBP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ADPRHL2Q9NX46 363 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 MRPS7Q9Y2R9 242 aaKnown RBP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 MRC2Q9UBG0 1479 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 PQLC2LA1A4F0 135 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 TRAF5O00463 557 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ZBTB14O43829 449 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 HRGP04196 525 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 CAPNS1P04632 268 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 TFPTP0C1Z6 253 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 KELP23276 732 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ASIC1P78348 528 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 CYP1B1Q16678 543 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 TYW3Q6IPR3 259 aaKnown RBP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 HMBOX1Q6NT76 420 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 LYSMD3Q7Z3D4 306 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 SLCO6A1Q86UG4 719 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 LHFPL3Q86UP9 236 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 CARM1Q86X55 608 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ZNF654Q8IZM8 581 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 FAM71DQ8N9W8 422 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ANKLE1Q8NAG6 615 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 KBTBD8Q8NFY9 601 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 STON2Q8WXE9 905 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 FIG4Q92562 907 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 AKAP1Q92667 903 aaKnown RBP eCLIP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 E2F7Q96AV8 911 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 HS6ST2Q96MM7 605 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 WRNIP1Q96S55 665 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ZSWIM1Q9BR11 485 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 HEMGNQ9BXL5 484 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 SLC26A6Q9BXS9 759 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 EPB41L4BQ9H329 900 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 EXD2Q9NVH0 621 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 GPRC5BQ9NZH0 403 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ADAM30Q9UKF2 790 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 AGTPBP1Q9UPW5 1226 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 NPHP3-ACAD11A0A0J9YXS1 232 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 KRBOX1C9JBD0 128 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 J3QRK9 145 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ZNF263O14978 683 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 RNGTTO60942 597 aaKnown RBP4.22□□□□□ -1.73
NEDD4-201ENST00000338963 LRRN2O75325 713 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 KATNA1O75449 491 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 PDGFRAP16234 1089 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 ME2P23368 584 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 HCAR3P49019 387 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 THNSL1Q8IYQ7 743 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 MPP5Q8N3R9 675 aa4.22□□□□□ -1.73
NEDD4-201ENST00000338963 KDM1BQ8NB78 822 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms