RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 SMIM23A6NLE4 172 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 LPXNO60711 386 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 CDH16O75309 829 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 CA3P07451 260 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 NR1D1P20393 614 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 KCNA4P22459 653 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 GCAP28676 217 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 HOXA9P31269 272 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 MMP13P45452 471 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 SMAD3P84022 425 aaKnown RBP15.79■□□□□ 0.12
LIMS1-202ENST00000338045 CYP4F8P98187 520 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 TNK2Q07912 1038 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 SERINC3Q13530 473 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 POLD3Q15054 466 aaPredicted RBP15.79■□□□□ 0.12
LIMS1-202ENST00000338045 SHHQ15465 462 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 PDE12Q6L8Q7 609 aaKnown RBP15.79■□□□□ 0.12
LIMS1-202ENST00000338045 Q6ZNB5 142 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 CHST9Q7L1S5 443 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 CFAP52Q8N1V2 620 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 RIBC1Q8N443 379 aaPredicted RBP15.79■□□□□ 0.12
LIMS1-202ENST00000338045 MICAL1Q8TDZ2 1067 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 FCRL5Q96RD9 977 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 TGS1Q96RS0 853 aaKnown RBP15.79■□□□□ 0.12
LIMS1-202ENST00000338045 DDX50Q9BQ39 737 aaKnown RBP15.79■□□□□ 0.12
LIMS1-202ENST00000338045 MLPHQ9BV36 600 aaPredicted RBP15.79■□□□□ 0.12
LIMS1-202ENST00000338045 STMN4Q9H169 189 aaPredicted RBP15.79■□□□□ 0.12
LIMS1-202ENST00000338045 ACSS3Q9H6R3 686 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 PLAC1Q9HBJ0 212 aa15.79■□□□□ 0.12
LIMS1-202ENST00000338045 ZFP37Q9Y6Q3 630 aaPredicted RBP15.79■□□□□ 0.12
LIMS1-202ENST00000338045 EXOC1LA0A1B0GW35 172 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 GFRA2O00451 464 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 CCL16O15467 120 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 CLDN11O75508 207 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 CSPG5O95196 566 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 GSTA2P09210 222 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 IRF1P10914 325 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 MAGEA10P43363 369 aaPredicted RBP15.78■□□□□ 0.12
LIMS1-202ENST00000338045 MAGOHP61326 146 aaKnown RBP15.78■□□□□ 0.12
LIMS1-202ENST00000338045 ERVK-21P61565 698 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 RPS24P62847 133 aaKnown RBP15.78■□□□□ 0.12
LIMS1-202ENST00000338045 SKOR1P84550 965 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 KDM7AQ6ZMT4 941 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 CAPN12Q6ZSI9 719 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 USP33Q8TEY7 942 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 EBNA1BP2Q99848 306 aaKnown RBP15.78■□□□□ 0.12
LIMS1-202ENST00000338045 GLOD4Q9HC38 313 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 ASAH2Q9NR71 780 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 PCDHA11Q9Y5I1 949 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 CPQQ9Y646 472 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 CHD5Q8TDI0 1954 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 J3KR12 359 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 NRG2O14511 850 aaPredicted RBP15.78■□□□□ 0.12
LIMS1-202ENST00000338045 PSMD3O43242 534 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 CLASP2O75122 1294 aaKnown RBP15.78■□□□□ 0.12
LIMS1-202ENST00000338045 RENBPP51606 427 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 IL10RBQ08334 325 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 PRPSAP1Q14558 356 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 TTC39BQ5VTQ0 682 aaPredicted RBP15.78■□□□□ 0.12
LIMS1-202ENST00000338045 FAM217AQ8IXS0 508 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 TEX26Q8N6G2 289 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 MAB21L3Q8N8X9 362 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 FBF1Q8TES7 1133 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 OXNAD1Q96HP4 312 aaPredicted RBP15.78■□□□□ 0.12
LIMS1-202ENST00000338045 PPP1R2P1Q96PQ5 205 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 GCNAQ96QF7 691 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 CORO1BQ9BR76 489 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 MAGEH1Q9H213 219 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 ATXN3LQ9H3M9 355 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 CASS4Q9NQ75 786 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 MAN1C1Q9NR34 630 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 RBM22Q9NW64 420 aaKnown RBP eCLIP15.78■□□□□ 0.12
LIMS1-202ENST00000338045 CTNNAL1Q9UBT7 734 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 ZC3H7BQ9UGR2 993 aaKnown RBP15.78■□□□□ 0.12
LIMS1-202ENST00000338045 SLC24A2Q9UI40 661 aa15.78■□□□□ 0.12
LIMS1-202ENST00000338045 A0A1B0GVM2 712 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 A0A1W2PRU2 124 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 TCRBV9S1A1TA0A576 114 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 TCAF2A6NFQ2 919 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 SDR42E2A6NKP2 422 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 FGF19O95750 216 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 CPP00450 1065 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 C1QAP02745 245 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 HLA-DQB2P05538 268 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 SGSHP51688 502 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 KLHL38Q2WGJ6 581 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 OTOP3Q7RTS5 596 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 MPP5Q8N3R9 675 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 ARNTL2Q8WYA1 636 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 ARHGEF2Q92974 986 aaKnown RBP15.77■□□□□ 0.11
LIMS1-202ENST00000338045 XPO6Q96QU8 1125 aaKnown RBP15.77■□□□□ 0.11
LIMS1-202ENST00000338045 DHRS4Q9BTZ2 278 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 LRRC40Q9H9A6 602 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 SP110Q9HB58 689 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 TBC1D30Q9Y2I9 924 aa15.77■□□□□ 0.11
LIMS1-202ENST00000338045 AAR2Q9Y312 384 aaKnown RBP15.77■□□□□ 0.11
LIMS1-202ENST00000338045 GBF1Q92538 1859 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 TRAV19A0A0A6YYK7 116 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 PRAMEF11O60813 436 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 RFPL2O75678 378 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 ANXA9O76027 345 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms