RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 PHF11Q9UIL8 331 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 KCNH1O95259 989 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 SLC26A3P40879 764 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 EPHB3P54753 998 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 TKFCQ3LXA3 575 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 RNF220Q5VTB9 566 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 PHC3Q8NDX5 983 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 MCFD2Q8NI22 146 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 MRPS31Q92665 395 aaKnown RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 USP7Q93009 1102 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 SLC4A9Q96Q91 983 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 TIPINQ9BVW5 301 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 NEO1Q92859 1461 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 KIAA0391O15091 583 aaKnown RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 PSMD4P55036 377 aaKnown RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 PSME3P61289 254 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 RAPSNQ13702 412 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 MIIPQ5JXC2 388 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 DENND5AQ6IQ26 1287 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 PAGE2Q7Z2X7 111 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 EXO5Q9H790 373 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 FBXO10Q9UK96 956 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 CORO1CQ9ULV4 474 aaPredicted RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 KPNA6O60684 536 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 CLUP10909 449 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 HUNKP57058 714 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 SPIRE1Q08AE8 756 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 PDIA6Q15084 440 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 HLA-DQA1Q5Y7H0 255 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 ERICH5Q6P6B1 374 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 BHLHB9Q6PI77 547 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 TMC7Q7Z402 723 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 AENQ8WTP8 325 aaKnown RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 MXRA8Q9BRK3 442 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 LRRC40Q9H9A6 602 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 CRNNQ9UBG3 495 aaPredicted RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 A0A0U1RQJ8 604 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 LOC110117498-PIK3R3F6TDL0 507 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 MTSS1O43312 755 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 PRKAR1AP10644 381 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 NAA20P61599 178 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 PPATQ06203 517 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 TGM3Q08188 693 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 ACTRT1Q8TDG2 376 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 VPS35Q96QK1 796 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 SLITRK2Q9H156 845 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 CCDC59Q9P031 241 aaKnown RBP8.01□□□□□ -1.13
CIITA-201ENST00000324288 CRYL1Q9Y2S2 319 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 NOTCH3Q9UM47 2321 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 SPHKAPQ2M3C7 1700 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 KDM4BO94953 1096 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 RHOBTB3O94955 611 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 TPBGLP0DKB5 382 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 POLD2P49005 469 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 MARSP56192 900 aaKnown RBP8.01□□□□□ -1.13
CIITA-201ENST00000324288 BST2Q10589 180 aaKnown RBP8.01□□□□□ -1.13
CIITA-201ENST00000324288 ZFP1Q6P2D0 407 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 TMED8Q6PL24 325 aaPredicted RBP8.01□□□□□ -1.13
CIITA-201ENST00000324288 GALNT5Q7Z7M9 940 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 TMEM110Q86TL2 294 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 BRSK2Q8IWQ3 736 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 ACTL9Q8TC94 416 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 BORCS5Q969J3 196 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 MYOZ2Q9NPC6 264 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 ARL8BQ9NVJ2 186 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 CNTNAP5Q8WYK1 1306 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 CEP250Q9BV73 2442 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 MAP3K4Q9Y6R4 1608 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 KANSL1LA0AUZ9 987 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 PIK3CDO00329 1044 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 SLC2A3P11169 496 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 CCNA2P20248 432 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 CDK16Q00536 496 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 SEMA3FQ13275 785 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 CA9Q16790 459 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 PAGE2BQ5JRK9 111 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 SAMD4BQ5PRF9 694 aaKnown RBP8.01□□□□□ -1.13
CIITA-201ENST00000324288 EIF3DO15371 548 aaKnown RBP eCLIP8.01□□□□□ -1.13
CIITA-201ENST00000324288 TIMM44O43615 452 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 FGRP09769 529 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 ZNF806P0C7X5 589 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 TYMPP19971 482 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 FSTL1Q12841 308 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 EPS8Q12929 822 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 ITGA7Q13683 1181 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 SLC15A2Q16348 729 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 SPDYCQ5MJ68 293 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 NET1Q7Z628 596 aaPredicted RBP8.01□□□□□ -1.13
CIITA-201ENST00000324288 TMEM132CQ8N3T6 1108 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 NAT14Q8WUY8 206 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 POF1BQ8WVV4 589 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 WDR41Q9HAD4 459 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 A1CFQ9NQ94 594 aaKnown RBP8.01□□□□□ -1.13
CIITA-201ENST00000324288 STOML2Q9UJZ1 356 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 FAM86B1E9PN63 330 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 CES2O00748 559 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 KPNA5O15131 536 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 MT-ND1P03886 318 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 RCAN1P53805 252 aa8.01□□□□□ -1.13
CIITA-201ENST00000324288 NOL9Q5SY16 702 aaKnown RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms