RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CNTN1Q12860 1018 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 ZNF177Q13360 481 aaPredicted RBP15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 BROXQ5VW32 411 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 CXorf57Q6NSI4 855 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 FOXR2Q6PJQ5 311 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 RRAGAQ7L523 313 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 ZNF605Q86T29 641 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 EHBP1Q8NDI1 1231 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 ZNF248Q8NDW4 579 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 IFT43Q96FT9 208 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 RPRD1AQ96P16 312 aaPredicted RBP15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 FEM1AQ9BSK4 669 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 FAM204AQ9H8W3 233 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 USP29Q9HBJ7 922 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 KLHL11Q9NVR0 708 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 SARDHQ9UL12 918 aa15.19■□□□□ 0.02
CCDC88B-201ENST00000301897 TENM4Q6N022 2769 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 E5RJQ4 531 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 ERVH48-1M5A8F1 160 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 TRIM38O00635 465 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 RIOK3O14730 519 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 CLDN11O75508 207 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 THEGLP0DJG4 465 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 KRT5P13647 590 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 DGKAP23743 735 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 AKT2P31751 481 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 DUSP3P51452 185 aaPredicted RBP15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 PCBP4P57723 403 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 CCDC173Q0VFZ6 552 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 EIF4EBP2Q13542 120 aaPredicted RBP15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 DLG2Q15700 870 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 ENOSF1Q7L5Y1 443 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 ERICH1Q86X53 443 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 DCP2Q8IU60 420 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 SPACA3Q8IXA5 215 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 TMEM145Q8NBT3 493 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 WBP1Q96G27 269 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 FAM81BQ96LP2 452 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 DEPDC7Q96QD5 511 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 LGMNQ99538 433 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 ASNSD1Q9NWL6 643 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 DDIT4Q9NX09 232 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 VPS28Q9UK41 221 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 MAST4O15021 2626 aa15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 TDRD6O60522 2096 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-201ENST00000301897 BICDL2A1A5D9 508 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 NEMP2A6NFY4 417 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 SDC3O75056 442 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 LETM1O95202 739 aaPredicted RBP15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 GNA14O95837 355 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 CALCAP01258 141 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 GP1BAP07359 652 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 CKMT1AP12532 417 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 METAP1P53582 386 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 SNX16P57768 344 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 KRT83P78385 493 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 RHDQ02161 417 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 KCNMA1Q12791 1236 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 EFHC1Q5JVL4 640 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 SMYD5Q6GMV2 418 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 FBXL22Q6P050 247 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 DENND1BQ6P3S1 775 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 KDM7AQ6ZMT4 941 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 Q6ZVU0 165 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 CIR1Q86X95 450 aaPredicted RBP15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 ARHGEF19Q8IW93 802 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 SLC25A45Q8N413 288 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 SH2D3CQ8N5H7 860 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 ZNF606Q8WXB4 792 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 ALG14Q96F25 216 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 C2orf49Q9BVC5 232 aaPredicted RBP15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 DUSP23Q9BVJ7 150 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 DYRK4Q9NR20 520 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 TMEM51Q9NW97 253 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 HS3ST2Q9Y278 367 aa15.17■□□□□ 0.02
CCDC88B-201ENST00000301897 SLC31A1O15431 190 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 THAP12O43422 761 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 HSF2BPO75031 334 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 DXOO77932 396 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 PLA2G2AP14555 144 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 HNRNPA2B1P22626 353 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 GNA15P30679 374 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 TMPRSS3P57727 454 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 ERVPABLB-1P60509 514 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 CXADRP78310 365 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 KCNH2Q12809 1159 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 PDCLQ13371 301 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 AUHQ13825 339 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 HORMAD1Q86X24 394 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 ZNF843Q8N446 348 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 TMIEQ8NEW7 156 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 KREMEN1Q96MU8 473 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 TIGD1Q96MW7 591 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 SLC2A13Q96QE2 648 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 SRRTQ9BXP5 876 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 INTS2Q9H0H0 1204 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 MUC3BQ9H195 1237 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 GDPD2Q9HCC8 539 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 NLGN3Q9NZ94 848 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 NCKIPSDQ9NZQ3 722 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms