RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 MYO1HQ8N1T3 1032 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 PPTC7Q8NI37 304 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 KCNH4Q9UQ05 1017 aa15.63■□□□□ 0.09
SHH-201ENST00000297261 RUNX1T1Q06455 604 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 SV2CQ496J9 727 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 GALNTL6Q49A17 601 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 SAMD4BQ5PRF9 694 aaKnown RBP15.62■□□□□ 0.09
SHH-201ENST00000297261 OLFML1Q6UWY5 402 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 ZNF410Q86VK4 478 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 CCDC28BQ9BUN5 200 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 WDR55Q9H6Y2 383 aaPredicted RBP15.62■□□□□ 0.09
SHH-201ENST00000297261 CACYBPQ9HB71 228 aaKnown RBP15.62■□□□□ 0.09
SHH-201ENST00000297261 CNGB3Q9NQW8 809 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 RPL14P50914 215 aaKnown RBP15.62■□□□□ 0.09
SHH-201ENST00000297261 MTTPP55157 894 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 CBX3Q13185 183 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 FSCN1Q16658 493 aaKnown RBP15.62■□□□□ 0.09
SHH-201ENST00000297261 ZIK1Q3SY52 487 aaPredicted RBP15.62■□□□□ 0.09
SHH-201ENST00000297261 DUSP28Q4G0W2 176 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 ARCQ7LC44 396 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 THEM5Q8N1Q8 247 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 CALML6Q8TD86 181 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 HTR3CQ8WXA8 447 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 BRI3BPQ8WY22 251 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 SLC7A8Q9UHI5 535 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 TDRKHQ9Y2W6 561 aaKnown RBP15.62■□□□□ 0.09
SHH-201ENST00000297261 HES2Q9Y543 173 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 KAT6AQ92794 2004 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 CBFA2T3O75081 653 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 AKR1A1P14550 325 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 POU6F1Q14863 301 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 VWA5B1Q5TIE3 1220 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 FAM228AQ86W67 206 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 HELQQ8TDG4 1101 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 DDIT4Q9NX09 232 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 ZNF180Q9UJW8 692 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 HBS1LQ9Y450 684 aaKnown RBP15.62■□□□□ 0.09
SHH-201ENST00000297261 KANSL1LA0AUZ9 987 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 BPGMP07738 259 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 ITGA2BP08514 1039 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 IL5RAQ01344 420 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 GRIK3Q13003 919 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 DGCR6Q14129 220 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 DEPDC1Q5TB30 811 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 LRRC38Q5VT99 294 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 CAMK1DQ8IU85 385 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 C10orf107Q8IVU9 208 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 LRRC39Q96DD0 335 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 ROGDIQ9GZN7 287 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 GPAMQ9HCL2 828 aa15.62■□□□□ 0.09
SHH-201ENST00000297261 ATP8B3O60423 1300 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 NCAM1P13591 858 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 CDH3P22223 829 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 NDST1P52848 882 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 PSME3P61289 254 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 RGMBQ6NW40 437 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 SZRD1Q7Z422 152 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 SCUBE3Q8IX30 993 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 SOCS4Q8WXH5 440 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 PHF12Q96QT6 1004 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 APBA2Q99767 749 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 CYP3A43Q9HB55 503 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 ACSS2Q9NR19 701 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 UTP6Q9NYH9 597 aaKnown RBP15.61■□□□□ 0.09
SHH-201ENST00000297261 CDH22Q9UJ99 828 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 ITGA11Q9UKX5 1188 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 PLLPQ9Y342 182 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 SMIM10L2AP0DMW4 78 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 SMIM10L2BP0DMW5 78 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 CCNB1P14635 433 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 LRPAP1P30533 357 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 ZNF235Q14590 738 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 ANKRD22Q5VYY1 191 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 ERLEC1Q96DZ1 483 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 RABGEF1Q9UJ41 708 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 RBMX2Q9Y388 322 aaKnown RBP15.61■□□□□ 0.09
SHH-201ENST00000297261 SBF2Q86WG5 1849 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 MTSS1O43312 755 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 NDUFS3O75489 264 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 LSM3P62310 102 aaKnown RBP15.61■□□□□ 0.09
SHH-201ENST00000297261 MFSD4BQ5TF39 518 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 BTBD8Q5XKL5 378 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 SLC44A1Q8WWI5 657 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 CD274Q9NZQ7 290 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 TEKT2Q9UIF3 430 aa15.61■□□□□ 0.09
SHH-201ENST00000297261 NCF1BA6NI72 391 aaPredicted RBP15.6■□□□□ 0.09
SHH-201ENST00000297261 NCF1CA8MVU1 366 aaPredicted RBP15.6■□□□□ 0.09
SHH-201ENST00000297261 RNF103O00237 685 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 NCF1P14598 390 aaPredicted RBP15.6■□□□□ 0.09
SHH-201ENST00000297261 ARF4P18085 180 aaPredicted RBP15.6■□□□□ 0.09
SHH-201ENST00000297261 CMC1Q7Z7K0 106 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 FNIP1Q8TF40 1166 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 CAPSLQ8WWF8 208 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 RERGLQ9H628 205 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 NRCAMQ92823 1304 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 ZC3H4Q9UPT8 1303 aaKnown RBP15.6■□□□□ 0.09
SHH-201ENST00000297261 PSMD12O00232 456 aaPredicted RBP15.6■□□□□ 0.09
SHH-201ENST00000297261 CHADO15335 359 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 PSMD3O43242 534 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 EIF4BP23588 611 aaKnown RBP15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms