RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ARL13AQ5H913 290 aaPredicted RBP12.89□□□□□ -0.35
LIG1-201ENST00000263274 C9orf57Q5W0N0 161 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 AAGABQ6PD74 315 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 TIFABQ6ZNK6 161 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 PDSS2Q86YH6 399 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 PSTKQ8IV42 348 aaKnown RBP12.89□□□□□ -0.35
LIG1-201ENST00000263274 NAT9Q9BTE0 207 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 ACE2Q9BYF1 805 aaPredicted RBP12.89□□□□□ -0.35
LIG1-201ENST00000263274 C1orf21Q9H246 121 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 VRTNQ9H8Y1 702 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 PIGVQ9NUD9 493 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 DDX18Q9NVP1 670 aaKnown RBP12.89□□□□□ -0.35
LIG1-201ENST00000263274 FZD10Q9ULW2 581 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 DYNC1LI2O43237 492 aaPredicted RBP12.89□□□□□ -0.35
LIG1-201ENST00000263274 NMBRP28336 390 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 CDK7P50613 346 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 CYLC2Q14093 348 aaPredicted RBP12.89□□□□□ -0.35
LIG1-201ENST00000263274 LSM12Q3MHD2 195 aaKnown RBP12.89□□□□□ -0.35
LIG1-201ENST00000263274 CCDC153Q494R4 210 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 OTOP3Q7RTS5 596 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 TMC7Q7Z402 723 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 SLC41A1Q8IVJ1 513 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 ARL10Q8N8L6 244 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 KYQ8NBH2 561 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 EXT2Q93063 718 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 PPWD1Q96BP3 646 aaKnown RBP12.89□□□□□ -0.35
LIG1-201ENST00000263274 NDNQ99608 321 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 RBBP8Q99708 897 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 NPAS2Q99743 824 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 ULBP1Q9BZM6 244 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 CHST12Q9NRB3 414 aa12.89□□□□□ -0.35
LIG1-201ENST00000263274 TMEM233B4DJY2 109 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 CSPG5O95196 566 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 VAPBO95292 243 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 USP17L7P0C7H9 530 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 THRAP10827 490 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 XRCC1P18887 633 aaPredicted RBP12.88□□□□□ -0.35
LIG1-201ENST00000263274 FGFR3P22607 806 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 GRM5P41594 1212 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 ACADSBP45954 432 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 ARHGAP1Q07960 439 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 NRF1Q16656 503 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 SLC25A52Q3SY17 297 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 PAN2Q504Q3 1202 aaKnown RBP12.88□□□□□ -0.35
LIG1-201ENST00000263274 SH3D19Q5HYK7 790 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 SPANXN3Q5MJ09 141 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 ACBD5Q5T8D3 534 aaPredicted RBP12.88□□□□□ -0.35
LIG1-201ENST00000263274 MAP3K21Q5TCX8 1036 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 FAM91A1Q658Y4 838 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 TWF2Q6IBS0 349 aaKnown RBP12.88□□□□□ -0.35
LIG1-201ENST00000263274 BNC2Q6ZN30 1099 aaPredicted RBP12.88□□□□□ -0.35
LIG1-201ENST00000263274 ZDHHC17Q8IUH5 632 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 BHLHE22Q8NFJ8 381 aaPredicted RBP12.88□□□□□ -0.35
LIG1-201ENST00000263274 ACTRT2Q8TDY3 377 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 TNIP3Q96KP6 325 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 GALNT8Q9NY28 637 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 ZNF232Q9UNY5 417 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 ASB14A6NK59 587 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 HACD1B0YJ81 288 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 BUD23O43709 281 aaKnown RBP12.88□□□□□ -0.35
LIG1-201ENST00000263274 PMPCBO75439 489 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 HNRNPLP14866 589 aaKnown RBP eCLIP12.88□□□□□ -0.35
LIG1-201ENST00000263274 THOP1P52888 689 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 GEN1Q17RS7 908 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 C9orf131Q5VYM1 1079 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 WSCD1Q658N2 575 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 SLC27A1Q6PCB7 646 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 RPS27LQ71UM5 84 aaKnown RBP12.88□□□□□ -0.35
LIG1-201ENST00000263274 APLFQ8IW19 511 aaPredicted RBP12.88□□□□□ -0.35
LIG1-201ENST00000263274 DSELQ8IZU8 1212 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 SPATA22Q8NHS9 363 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 OPTNQ96CV9 577 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 DNAJC1Q96KC8 554 aaKnown RBP12.88□□□□□ -0.35
LIG1-201ENST00000263274 OLFM3Q96PB7 478 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 PRPF18Q99633 342 aaKnown RBP12.88□□□□□ -0.35
LIG1-201ENST00000263274 SPATA16Q9BXB7 569 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 GRIP2Q9C0E4 1043 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 OCEL1Q9H607 264 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 PLEKHA5Q9HAU0 1116 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 DNAJC28Q9NX36 388 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 MKS1Q9NXB0 559 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 UBQLN1Q9UMX0 589 aaKnown RBP12.88□□□□□ -0.35
LIG1-201ENST00000263274 PCDHB12Q9Y5F1 795 aa12.88□□□□□ -0.35
LIG1-201ENST00000263274 GPC4O75487 556 aa12.87□□□□□ -0.35
LIG1-201ENST00000263274 MLNP12872 115 aa12.87□□□□□ -0.35
LIG1-201ENST00000263274 TSPAN8P19075 237 aa12.87□□□□□ -0.35
LIG1-201ENST00000263274 PTPN3P26045 913 aa12.87□□□□□ -0.35
LIG1-201ENST00000263274 MAGEA6P43360 314 aa12.87□□□□□ -0.35
LIG1-201ENST00000263274 TAF6P49848 677 aa12.87□□□□□ -0.35
LIG1-201ENST00000263274 PCSK7Q16549 785 aa12.87□□□□□ -0.35
LIG1-201ENST00000263274 RARS2Q5T160 578 aaKnown RBP12.87□□□□□ -0.35
LIG1-201ENST00000263274 ARHGAP18Q8N392 663 aa12.87□□□□□ -0.35
LIG1-201ENST00000263274 ZFAND2BQ8WV99 257 aa12.87□□□□□ -0.35
LIG1-201ENST00000263274 DNAJB3Q8WWF6 145 aa12.87□□□□□ -0.35
LIG1-201ENST00000263274 JADE3Q92613 823 aa12.87□□□□□ -0.35
LIG1-201ENST00000263274 DNAI2Q9GZS0 605 aa12.87□□□□□ -0.35
LIG1-201ENST00000263274 C15orf38-AP3S2A0A0A6YYH1 394 aa12.87□□□□□ -0.35
LIG1-201ENST00000263274 CCNT2O60583 730 aaKnown RBP12.87□□□□□ -0.35
LIG1-201ENST00000263274 ATP6V1G1O75348 118 aa12.87□□□□□ -0.35
LIG1-201ENST00000263274 CYP2C9P11712 490 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms