RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ZSCAN5DPP0CG00 497 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 ALADP13716 330 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 XRCC4Q13426 336 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 ZNHIT3Q15649 155 aaPredicted RBP19.44■□□□□ 0.7
UPF1-201ENST00000262803 INSCQ1MX18 579 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 BHLHB9Q6PI77 547 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 DEFB106AQ8N104 65 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 WNT8BQ93098 351 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 A0A096LPK6 155 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 ENDOD1O94919 500 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 YBX3P16989 372 aaKnown RBP eCLIP19.43■□□□□ 0.78e-7■■■□□ 16.6
UPF1-201ENST00000262803 SLC39A12Q504Y0 691 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 HECTD3Q5T447 861 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 HELQQ8TDG4 1101 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 SPATA5L1Q9BVQ7 753 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 IL22Q9GZX6 179 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 OPTCQ9UBM4 332 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 GAKO14976 1311 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 NFICP08651 508 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 PAICSP22234 425 aaKnown RBP19.43■□□□□ 0.7
UPF1-201ENST00000262803 MAPK9P45984 424 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 SERPINH1P50454 418 aaKnown RBP19.43■□□□□ 0.7
UPF1-201ENST00000262803 SLC34A1Q06495 639 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 GRM3Q14832 879 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 ALFQ53S48 1182 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 DACT2Q5SW24 774 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 CELF3Q5SZQ8 465 aaKnown RBP19.43■□□□□ 0.7
UPF1-201ENST00000262803 KCNT2Q6UVM3 1135 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 MKL1Q969V6 931 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 MTERF3Q96E29 417 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 MFSD1Q9H3U5 465 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 ARMCX1Q9P291 453 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 GTF2A1LQ9UNN4 478 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 ARIH1Q9Y4X5 557 aaPredicted RBP19.43■□□□□ 0.7
UPF1-201ENST00000262803 ASTN1O14525 1302 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 ASTN2O75129 1339 aaPredicted RBP19.43■□□□□ 0.7
UPF1-201ENST00000262803 MROH2AA6NES4 1674 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.43■□□□□ 0.7
UPF1-201ENST00000262803 MRPS6P82932 125 aaKnown RBP19.43■□□□□ 0.7
UPF1-201ENST00000262803 PLPPR4Q7Z2D5 763 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 PHF21BQ96EK2 531 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 SLC25A23Q9BV35 468 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 WNT10BO00744 389 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 FGFR1P11362 822 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 AIF1P55008 147 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 SLC9A5Q14940 896 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 TSNQ15631 228 aaKnown RBP19.43■□□□□ 0.7
UPF1-201ENST00000262803 ULK2Q8IYT8 1036 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 CAMKK1Q8N5S9 505 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 POMGNT2Q8NAT1 580 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 LNX1Q8TBB1 728 aaPredicted RBP19.43■□□□□ 0.7
UPF1-201ENST00000262803 DNAJC1Q96KC8 554 aaKnown RBP19.43■□□□□ 0.7
UPF1-201ENST00000262803 MARCH2Q9P0N8 246 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 NFKBIL1Q9UBC1 381 aaPredicted RBP19.43■□□□□ 0.7
UPF1-201ENST00000262803 TRIM17Q9Y577 477 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 PTCH2Q9Y6C5 1203 aa19.43■□□□□ 0.7
UPF1-201ENST00000262803 PPLO60437 1756 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 GCATO75600 419 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 PSMD10O75832 226 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 BAIAP3O94812 1187 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 DPYSL3Q14195 570 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 POU5F2Q8N7G0 328 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 HPS4Q9NQG7 708 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 ASAH2Q9NR71 780 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 CATSPERZQ9NTU4 200 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 CTSEP14091 401 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 AKAP5P24588 427 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 PCID2Q5JVF3 399 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 SLC2A14Q8TDB8 520 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 AKT1S1Q96B36 256 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 SH3BP4Q9P0V3 963 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 DUSP12Q9UNI6 340 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 NDUFS2O75306 463 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 PARNO95453 639 aaKnown RBP19.42■□□□□ 0.7
UPF1-201ENST00000262803 MYBL2P10244 700 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 RBL1P28749 1068 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 FAM187BQ17R55 369 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 CES3Q6UWW8 571 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 AGMOQ6ZNB7 445 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 ZNF662Q6ZS27 426 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 NEK10Q6ZWH5 1172 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 PROX1Q92786 737 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 TINF2Q9BSI4 451 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 RAB23Q9ULC3 237 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 CLUHO75153 1309 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 SMIM31A0A1B0GVY4 71 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 CCDC154A6NI56 674 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 E5RJQ4 531 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 ADH1AP07327 375 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 RHBDL3P58872 404 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 SPATA31D1Q6ZQQ2 1576 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 PACS2Q86VP3 889 aa19.42■□□□□ 0.7
UPF1-201ENST00000262803 HJURPQ8NCD3 748 aaPredicted RBP19.42■□□□□ 0.7
UPF1-201ENST00000262803 PAIP2BQ9ULR5 123 aaKnown RBP19.42■□□□□ 0.7
UPF1-201ENST00000262803 CHADO15335 359 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 MAGEC1O60732 1142 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 STX11O75558 287 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 IL2P60568 153 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 CATSPERGQ6ZRH7 1159 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 SENP8Q96LD8 212 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms