RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 SOX13Q9UN79 622 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 MTO1Q9Y2Z2 717 aaKnown RBP13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 A0A0G2JND7 137 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 ZCWPW2A0A1B0GU75 182 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 WASH4PA8MWX3 477 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 NEBLO76041 1014 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 RTN3O95197 1032 aaPredicted RBP13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 BPGMP07738 259 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 CPB1P15086 417 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 FGFR3P22607 806 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 YWHAQP27348 245 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 SPRP35270 261 aaPredicted RBP13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 ARFIP2P53365 341 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 ARPP19P56211 112 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 USP46P62068 366 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 PDE1CQ14123 709 aaPredicted RBP13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 CHI3L2Q15782 390 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 ANO4Q32M45 955 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 AFMIDQ63HM1 303 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 FAM43BQ6ZT52 329 aaPredicted RBP13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 ASRGL1Q7L266 308 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 PARP9Q8IXQ6 854 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 ATAD1Q8NBU5 361 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 SEPT8Q92599 483 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 FBXO32Q969P5 355 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 SLC39A13Q96H72 371 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 C7orf26Q96N11 449 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 RBBP8Q99708 897 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 TBL1YQ9BQ87 522 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 GPR62Q9BZJ7 368 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 OLA1Q9NTK5 396 aaKnown RBP13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 DONSONQ9NYP3 566 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 IL37Q9NZH6 218 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 HOXA2O43364 376 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 MGRN1O60291 552 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 TPH1P17752 444 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 TYK2P29597 1187 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 CDK7P50613 346 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 GEMP55040 296 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 BST1Q10588 318 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 ELAVL2Q12926 359 aaKnown RBP13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 SMAD1Q15797 465 aaKnown RBP13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 INSCQ1MX18 579 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 ARTNQ5T4W7 220 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 PIK3R6Q5UE93 754 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 STRA8Q7Z7C7 330 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 C14orf80Q86SX3 495 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 KCNMB4Q86W47 210 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 FAM126BQ8IXS8 530 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 DOCK4Q8N1I0 1966 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 ATP6V0D2Q8N8Y2 350 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 SPPL2BQ8TCT7 592 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 MFSD3Q96ES6 412 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 ARHGEF3Q9NR81 526 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 CHRAC1Q9NRG0 131 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 MPP6Q9NZW5 540 aa13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 MAGED2Q9UNF1 606 aaPredicted RBP13.18□□□□□ -0.3
SPTLC1-201ENST00000262554 GREB1Q4ZG55 1949 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 FNDC1Q4ZHG4 1894 aaPredicted RBP13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 CCDC195A0A1B0GUA6 201 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 DLDP09622 509 aaKnown RBP13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 TIE1P35590 1138 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 SLC11A1P49279 550 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 SERPINB8P50452 374 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 PAPOLAP51003 745 aaKnown RBP13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 PRMT2P55345 433 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 KCNJ2P63252 427 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 EFEMP1Q12805 493 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 SMARCB1Q12824 385 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 SNCBQ16143 134 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 TEDDM1Q5T9Z0 273 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 N4BP2L1Q5TBK1 243 aaPredicted RBP13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 MTDHQ86UE4 582 aaKnown RBP13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 TTC9BQ8N6N2 239 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 SPATA22Q8NHS9 363 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 PPP1R14CQ8TAE6 165 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 B3GALT6Q96L58 329 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 TMEM120AQ9BXJ8 343 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 MRPL9Q9BYD2 267 aaKnown RBP13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 TLR8Q9NR97 1041 aaKnown RBP13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 C20orf96Q9NUD7 363 aaPredicted RBP13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 NDFIP2Q9NV92 336 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 RBM22Q9NW64 420 aaKnown RBP eCLIP13.17□□□□□ -0.37e-6■■■■□ 24.6
SPTLC1-201ENST00000262554 MARCH5Q9NX47 278 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 NSMCE4AQ9NXX6 385 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 CLIC5Q9NZA1 410 aa13.17□□□□□ -0.3
SPTLC1-201ENST00000262554 FAM92AA1XBS5 289 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 H7C4K7 107 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 RHOQP17081 205 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 GATMP50440 423 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 RASSF2P50749 326 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 NDST2P52849 883 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 LIMK2P53671 638 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 CSE1LP55060 971 aaKnown RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 STX3Q13277 289 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 GPR17Q13304 367 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 GPNMBQ14956 572 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 TRIP4Q15650 581 aaPredicted RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 MGAT5BQ3V5L5 792 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms