RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 LCMT1Q9UIC8 334 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 VPS28Q9UK41 221 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 NEU3Q9UQ49 428 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 VPS13AQ96RL7 3174 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 TCRBV21S2A2A0A5A6 115 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 EIF3CLB5ME19 914 aaKnown RBP17.19■□□□□ 0.34
SDCBP-201ENST00000260130 EPHB2P29323 1055 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 NBL1P41271 181 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 CTSOP43234 321 aaPredicted RBP17.19■□□□□ 0.34
SDCBP-201ENST00000260130 NUMBP49757 651 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 ST8SIA6P61647 398 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 SULT2A1Q06520 285 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 STARD3Q14849 445 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 BOLA3Q53S33 107 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 KIAA1211LQ6NV74 962 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 KIAA1328Q86T90 577 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 NLRP14Q86W24 1093 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 RASSF3Q86WH2 238 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 RHOT2Q8IXI1 618 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 EIF3CQ99613 913 aaKnown RBP17.19■□□□□ 0.34
SDCBP-201ENST00000260130 CD248Q9HCU0 757 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 TMEM248Q9NWD8 314 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 ERVW-1Q9UQF0 538 aa17.19■□□□□ 0.34
SDCBP-201ENST00000260130 ILVBLA1L0T0 632 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 AXIN1O15169 862 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 LILRB5O75023 590 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 PROSCO94903 275 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 EPHX1P07099 455 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 SRPRAP08240 638 aaKnown RBP17.18■□□□□ 0.34
SDCBP-201ENST00000260130 PRKCHP24723 683 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 IL1R2P27930 398 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 CKAP4Q07065 602 aaKnown RBP17.18■□□□□ 0.34
SDCBP-201ENST00000260130 CA9Q16790 459 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 KDM1BQ8NB78 822 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 MDGA1Q8NFP4 955 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 MYO19Q96H55 970 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 MRGPRX3Q96LB0 322 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 PCDHA13Q9Y5I0 950 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 SAR1BQ9Y6B6 198 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 A0A0D9SEW6 157 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 ZBTB24O43167 697 aaPredicted RBP17.18■□□□□ 0.34
SDCBP-201ENST00000260130 SYNCRIPO60506 623 aaKnown RBP17.18■□□□□ 0.34
SDCBP-201ENST00000260130 TCF4P15884 667 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 HTR7P34969 479 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 MAPKAPK2P49137 400 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 CASP8Q14790 479 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 HSP90B2PQ58FF3 399 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 PAPD7Q5XG87 772 aaKnown RBP17.18■□□□□ 0.34
SDCBP-201ENST00000260130 ZNF783Q6ZMS7 281 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 NOA1Q8NC60 698 aaKnown RBP17.18■□□□□ 0.34
SDCBP-201ENST00000260130 HMGB4Q8WW32 186 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 RFFLQ8WZ73 363 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 ERLEC1Q96DZ1 483 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 LUC7LQ9NQ29 371 aaKnown RBP17.18■□□□□ 0.34
SDCBP-201ENST00000260130 NDFIP2Q9NV92 336 aa17.18■□□□□ 0.34
SDCBP-201ENST00000260130 BCCIPQ9P287 314 aaKnown RBP eCLIP17.18■□□□□ 0.34
SDCBP-201ENST00000260130 MYO18AQ92614 2054 aaKnown RBP17.17■□□□□ 0.34
SDCBP-201ENST00000260130 HLA-EP13747 358 aa17.17■□□□□ 0.34
SDCBP-201ENST00000260130 CNR2P34972 360 aa17.17■□□□□ 0.34
SDCBP-201ENST00000260130 MAP9Q49MG5 647 aa17.17■□□□□ 0.34
SDCBP-201ENST00000260130 KCNT1Q5JUK3 1230 aa17.17■□□□□ 0.34
SDCBP-201ENST00000260130 RPL10LQ96L21 214 aaKnown RBP17.17■□□□□ 0.34
SDCBP-201ENST00000260130 CATSPERBQ9H7T0 1116 aa17.17■□□□□ 0.34
SDCBP-201ENST00000260130 ZWILCHQ9H900 591 aa17.17■□□□□ 0.34
SDCBP-201ENST00000260130 CWC15Q9P013 229 aaKnown RBP17.17■□□□□ 0.34
SDCBP-201ENST00000260130 TRIM10Q9UDY6 481 aa17.17■□□□□ 0.34
SDCBP-201ENST00000260130 SUN2Q9UH99 717 aa17.17■□□□□ 0.34
SDCBP-201ENST00000260130 SLCO3A1Q9UIG8 710 aa17.17■□□□□ 0.34
SDCBP-201ENST00000260130 MTA2O94776 668 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 GABRG2P18507 467 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 NNMTP40261 264 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 TPI1P60174 286 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 SLC25A11Q02978 314 aaKnown RBP17.16■□□□□ 0.34
SDCBP-201ENST00000260130 GNA12Q03113 381 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 TCEAL1Q15170 157 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 PGBD3Q8N328 593 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 ZNF366Q8N895 744 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 RTL3Q8N8U3 475 aaKnown RBP17.16■□□□□ 0.34
SDCBP-201ENST00000260130 FAM71BQ8TC56 605 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 KCTD15Q96SI1 283 aaPredicted RBP17.16■□□□□ 0.34
SDCBP-201ENST00000260130 PSMB7Q99436 277 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 C2orf49Q9BVC5 232 aaPredicted RBP17.16■□□□□ 0.34
SDCBP-201ENST00000260130 VPS18Q9P253 973 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 EEF2KO00418 725 aaKnown RBP17.16■□□□□ 0.34
SDCBP-201ENST00000260130 FGF10O15520 208 aaPredicted RBP17.16■□□□□ 0.34
SDCBP-201ENST00000260130 HRO43593 1189 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 RARAP10276 462 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 SSR1P43307 286 aaKnown RBP17.16■□□□□ 0.34
SDCBP-201ENST00000260130 LMAN1P49257 510 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 ZNF135P52742 658 aaPredicted RBP17.16■□□□□ 0.34
SDCBP-201ENST00000260130 MESDQ14696 234 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 HADHQ16836 314 aaKnown RBP17.16■□□□□ 0.34
SDCBP-201ENST00000260130 SMTNL2Q2TAL5 461 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 PPP6R3Q5H9R7 873 aaPredicted RBP17.16■□□□□ 0.34
SDCBP-201ENST00000260130 OR7D4Q8NG98 312 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 TEKT4Q8WW24 435 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 TPSD1Q9BZJ3 242 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 SEMA4AQ9H3S1 761 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 VIPAS39Q9H9C1 493 aa17.16■□□□□ 0.34
SDCBP-201ENST00000260130 MED4Q9NPJ6 270 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms