RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CXorf21Q9HAI6 301 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 CYP4F12Q9HCS2 524 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 PCDH12Q9NPG4 1184 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 FEM1BQ9UK73 627 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 CNTN6Q9UQ52 1028 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 CORINQ9Y5Q5 1042 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 TLL2Q9Y6L7 1015 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 CEP350Q5VT06 3117 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 PRSS51A0A1B0GVH4 220 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 TMEM247A6NEH6 219 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 B4GALT5O43286 388 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 TRIM13O60858 407 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 NCAM1P13591 858 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 PSMB4P28070 264 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 PLK1P53350 603 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 PMS2P3Q13401 168 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 BTG3Q14201 252 aaPredicted RBP14.63□□□□□ -0.07
SDC1-201ENST00000254351 PRPSAP1Q14558 356 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 FAM47CQ5HY64 1035 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 AARS2Q5JTZ9 985 aaKnown RBP14.63□□□□□ -0.07
SDC1-201ENST00000254351 IFNEQ86WN2 208 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 TICAM1Q8IUC6 712 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 CBR4Q8N4T8 237 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 C7orf31Q8N865 590 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 CLEC4CQ8WTT0 213 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 MFSD3Q96ES6 412 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 PLEKHA8Q96JA3 519 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 FCRL3Q96P31 734 aaPredicted RBP14.63□□□□□ -0.07
SDC1-201ENST00000254351 POLR1BQ9H9Y6 1135 aa14.63□□□□□ -0.07
SDC1-201ENST00000254351 SERPINB7O75635 380 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 ITGB3P05106 788 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 CCDC130P13994 396 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 ACAT1P24752 427 aaKnown RBP14.62□□□□□ -0.07
SDC1-201ENST00000254351 PPARGP37231 505 aaPredicted RBP14.62□□□□□ -0.07
SDC1-201ENST00000254351 HARS2P49590 506 aaKnown RBP14.62□□□□□ -0.07
SDC1-201ENST00000254351 ZNF143P52747 638 aaPredicted RBP14.62□□□□□ -0.07
SDC1-201ENST00000254351 NUP107P57740 925 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 CCDC14Q49A88 953 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 ZNF667Q5HYK9 610 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 MCF2L2Q86YR7 1114 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 MTG1Q9BT17 334 aaPredicted RBP14.62□□□□□ -0.07
SDC1-201ENST00000254351 ZNF518BQ9C0D4 1074 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 CLK4Q9HAZ1 481 aaKnown RBP14.62□□□□□ -0.07
SDC1-201ENST00000254351 NMRAL1Q9HBL8 299 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 COPG1Q9Y678 874 aaKnown RBP14.62□□□□□ -0.07
SDC1-201ENST00000254351 HTRA2O43464 458 aaPredicted RBP14.62□□□□□ -0.07
SDC1-201ENST00000254351 NFKBIAP25963 317 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 GRM5P41594 1212 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 PSME3P61289 254 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 PHEXP78562 749 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 NR1D2Q14995 579 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 AMHR2Q16671 573 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 PPP1R3AQ16821 1122 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 SLFN12LQ6IEE8 588 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 ZFP1Q6P2D0 407 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 PARP8Q8N3A8 854 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 HEPHQ9BQS7 1158 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 DHX33Q9H6R0 707 aaKnown RBP14.62□□□□□ -0.07
SDC1-201ENST00000254351 PLK2Q9NYY3 685 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 DGKBQ9Y6T7 804 aa14.62□□□□□ -0.07
SDC1-201ENST00000254351 NEMP2A6NFY4 417 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 G3V2L1 256 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 BCAS2O75934 225 aaPredicted RBP14.61□□□□□ -0.07
SDC1-201ENST00000254351 STBD1O95210 358 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 C2P06681 752 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 GSTT2P0CG29 244 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 GSTT2BP0CG30 244 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 GLDCP23378 1020 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 PTGER2P43116 358 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 SP2Q02086 613 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 PTPN11Q06124 597 aaPredicted RBP14.61□□□□□ -0.07
SDC1-201ENST00000254351 SLC15A3Q8IY34 581 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 RNF149Q8NC42 400 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 CANT1Q8WVQ1 401 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 NDRG1Q92597 394 aaKnown RBP14.61□□□□□ -0.07
SDC1-201ENST00000254351 CPB2Q96IY4 423 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 CNPY3Q9BT09 278 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 FRMD8P1Q9BZ68 369 aaPredicted RBP14.61□□□□□ -0.07
SDC1-201ENST00000254351 PIF1Q9H611 641 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 CDYLQ9Y232 598 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 PRORSD1PA6NEY8 169 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 INO80B-WBP1J3KQ70 363 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 LDHAP00338 332 aaKnown RBP14.61□□□□□ -0.07
SDC1-201ENST00000254351 RPL14P50914 215 aaKnown RBP14.61□□□□□ -0.07
SDC1-201ENST00000254351 CAPSQ13938 189 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 TAZQ16635 292 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 ZNF362Q5T0B9 420 aaPredicted RBP14.61□□□□□ -0.07
SDC1-201ENST00000254351 TMEM214Q6NUQ4 689 aaKnown RBP14.61□□□□□ -0.07
SDC1-201ENST00000254351 DCDC5Q6ZRR9 648 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 KDELC2Q7Z4H8 507 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 GPR180Q86V85 440 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 FAM160B2Q86V87 743 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 ZC3H7AQ8IWR0 971 aaKnown RBP14.61□□□□□ -0.07
SDC1-201ENST00000254351 SLC4A11Q8NBS3 891 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 MAML3Q96JK9 1138 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 INO80BQ9C086 356 aaPredicted RBP14.61□□□□□ -0.07
SDC1-201ENST00000254351 VPS51Q9UID3 782 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 PRPF19Q9UMS4 504 aaKnown RBP14.61□□□□□ -0.07
SDC1-201ENST00000254351 ST14Q9Y5Y6 855 aa14.61□□□□□ -0.07
SDC1-201ENST00000254351 DNAH12Q6ZR08 3092 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms