RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Rnaseh2bQ80ZV0 308 aa12.12□□□□□ -0.47
Trim56-201ENSMUST00000054384 Snap47Q8R570 413 aa12.12□□□□□ -0.47
Trim56-201ENSMUST00000054384 MutyhQ99P21 515 aa12.12□□□□□ -0.47
Trim56-201ENSMUST00000054384 Lrrc40Q9CRC8 602 aa12.12□□□□□ -0.47
Trim56-201ENSMUST00000054384 Snx7Q9CY18 387 aa12.12□□□□□ -0.47
Trim56-201ENSMUST00000054384 Smpd3Q9JJY3 655 aa12.12□□□□□ -0.47
Trim56-201ENSMUST00000054384 Mpp6Q9JLB0 553 aa12.12□□□□□ -0.47
Trim56-201ENSMUST00000054384 Magea2Q9R2A2 320 aa12.12□□□□□ -0.47
Trim56-201ENSMUST00000054384 Aox3G3X982 1335 aa12.12□□□□□ -0.47
Trim56-201ENSMUST00000054384 Catsperg2C6KI89 1145 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 CkmP07310 381 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Cap1P40124 474 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Colec11Q3SXB8 272 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Hdgfl2Q3UMU9 669 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Brd9Q3UQU0 596 aaKnown RBP12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Itga3Q62470 1053 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Pgrmc2Q80UU9 217 aaKnown RBP12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Olfr589Q8VGV8 317 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Tfap2dQ91ZK0 452 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Ints11Q9CWS4 600 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Atxn2O70305 1285 aaKnown RBP12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Nedd1P33215 660 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Tmem165P52875 323 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 1700061G19RikQ08EE8 705 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Ptcd3Q14C51 685 aaKnown RBP12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Wee2Q66JT0 555 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Ptrh1Q8BW00 204 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Robo4Q8C310 1012 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Sfrp1Q8C4U3 314 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Epn2Q8CHU3 595 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Lin7aQ8JZS0 233 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Lrrc49Q91YK0 686 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Ripor3A1L3T7 938 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Ankrd63A2ARS0 390 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Rab2aP53994 212 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Rcsd1Q3UZA1 412 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Mup20Q5FW60 181 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Ptger2Q62053 362 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Dpysl3Q62188 570 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Gpsm1Q6IR34 673 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 HpseQ6YGZ1 535 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Pex26Q8BGI5 305 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Itfg1Q99KW9 610 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Duoxa2Q9D311 320 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 CemipQ8BI06 1361 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Klhl32A2AJX0 620 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Smim22J3QP37 91 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 DtymkP97930 212 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 IdsQ08890 552 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Alkbh5Q3TSG4 395 aaKnown RBP12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Shc3Q61120 474 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 C2cd2lQ80X80 706 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Rdh13Q8CEE7 334 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Adam32Q8K410 754 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Hdhd5Q91WM2 419 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Borcs5Q9D920 195 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Panx1Q9JIP4 426 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 RykQ01887 594 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Teddm2Q208S0 260 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Itih2Q61703 946 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Pan2Q8BGF7 1200 aaKnown RBP12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 LnpepQ8C129 1025 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Tyw5A2RSX7 315 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Krt83E9Q1Y9 479 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Ikzf3O08900 507 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Pold2O35654 469 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Cyp19a1P28649 503 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Pcnx4Q3UVY5 1174 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Tnpo3Q6P2B1 923 aaKnown RBP12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 TufmQ8BFR5 452 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Gpat3Q8C0N2 438 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Saysd1Q8K190 188 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Krtap5-3Q9D226 196 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Myh13B1AR69 1938 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 JcadQ5DTX6 1320 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Kcnh4A2A5F7 1018 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Ptrhd1D3Z4S3 140 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Glud1P26443 558 aaKnown RBP12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Ntrk1Q3UFB7 799 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Rftn2Q8CHX7 500 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Sema6aO35464 1031 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Kcnu1O54982 1121 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Pdk4O70571 412 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Hipk1O88904 1210 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Cyp2c65Q148B1 490 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Fam89aQ14BJ1 175 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Phf23Q8BSN5 401 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 MymkQ9D1N4 221 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Armc8Q9DBR3 673 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Nek6Q9ES70 313 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 PolkQ9QUG2 852 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Tjp3Q9QXY1 905 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Khdrbs2Q9WU01 349 aa12.11□□□□□ -0.47
Trim56-201ENSMUST00000054384 Zbtb14Q08376 449 aa12.1□□□□□ -0.47
Trim56-201ENSMUST00000054384 Oog3Q3UWY1 500 aa12.1□□□□□ -0.47
Trim56-201ENSMUST00000054384 Slc29a2Q61672 456 aa12.1□□□□□ -0.47
Trim56-201ENSMUST00000054384 Trim14Q8BVW3 440 aa12.1□□□□□ -0.47
Trim56-201ENSMUST00000054384 MtrrQ8C1A3 696 aa12.1□□□□□ -0.47
Trim56-201ENSMUST00000054384 ScaiQ8C8N2 606 aa12.1□□□□□ -0.47
Trim56-201ENSMUST00000054384 Erich5Q8K0S2 362 aa12.1□□□□□ -0.47
Retrieved 100 of 22,080 RNA–protein pairs in 86.9 ms