RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 TCAF2A6NFQ2 919 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 MCF2LO15068 1137 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 SLC2A3P11169 496 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 VAV1P15498 845 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 CKMT2P17540 419 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 ACP1P24666 158 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 NNMTP40261 264 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 ABCG1P45844 678 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 METAP1P53582 386 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 KCNH2Q12809 1159 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 TARDBPQ13148 414 aaKnown RBP eCLIP16.93■□□□□ 0.3
CLN3-255ENST00000637100 C6orf118Q5T5N4 469 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 AGBL4Q5VU57 503 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 CHSY1Q86X52 802 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 ATP6V0D2Q8N8Y2 350 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 ERCC4Q92889 916 aaPredicted RBP16.93■□□□□ 0.3
CLN3-255ENST00000637100 SLC2A13Q96QE2 648 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 MED15Q96RN5 788 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 ASNSD1Q9NWL6 643 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 TJP2Q9UDY2 1190 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 PTPRQQ9UMZ3 2332 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 BPTFQ12830 3046 aa16.93■□□□□ 0.3
CLN3-255ENST00000637100 CFAP46Q8IYW2 2715 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 TBC1D3DA0A087WVF3 549 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 TBC1D3IA0A087WXS9 549 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 TBC1D3EA0A087X179 549 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 TBC1D3KA0A087X1G2 549 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 TBC1D3FA6NER0 549 aaPredicted RBP16.92■□□□□ 0.3
CLN3-255ENST00000637100 TBC1D3LB9A6J9 549 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 E5RJQ4 531 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 F5H5T6 163 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 MAGEC1O60732 1142 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 RNGTTO60942 597 aaKnown RBP16.92■□□□□ 0.3
CLN3-255ENST00000637100 MOCS2O96007 188 aaPredicted RBP16.92■□□□□ 0.3
CLN3-255ENST00000637100 IL1BP01584 269 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 TBC1D3HP0C7X1 549 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 CLDN6P56747 220 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 MTA1Q13330 715 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 STIM1Q13586 685 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 HES3Q5TGS1 186 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 RNF219Q5W0B1 726 aaPredicted RBP16.92■□□□□ 0.3
CLN3-255ENST00000637100 TBC1D3GQ6DHY5 549 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 TBC1D3CQ6IPX1 549 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 FBXL22Q6P050 247 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.92■□□□□ 0.3
CLN3-255ENST00000637100 PRPF39Q86UA1 669 aaKnown RBP16.92■□□□□ 0.3
CLN3-255ENST00000637100 TBC1D3Q8IZP1 549 aaPredicted RBP16.92■□□□□ 0.3
CLN3-255ENST00000637100 WDTC1Q8N5D0 677 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 DCBLD1Q8N8Z6 715 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 TMEM145Q8NBT3 493 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 OR52K2Q8NGK3 314 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 FEM1AQ9BSK4 669 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 ST7Q9NRC1 585 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 TBC1D30Q9Y2I9 924 aa16.92■□□□□ 0.3
CLN3-255ENST00000637100 CAPN9O14815 690 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 RTN2O75298 545 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 GNA14O95837 355 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 PDGFRAP16234 1089 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 ITPKBP27987 946 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 TAS2R38P59533 333 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 TAF5Q15542 800 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 CCDC40Q4G0X9 1142 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 CCDC157Q569K6 752 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 FAM46CQ5VWP2 391 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 NEK5Q6P3R8 708 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 ENOSF1Q7L5Y1 443 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 DSG4Q86SJ6 1040 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 SLC25A45Q8N413 288 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 OR8D1Q8WZ84 308 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 PPP1R9BQ96SB3 815 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 PREBQ9HCU5 417 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 SLC12A6Q9UHW9 1150 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 MAN1B1Q9UKM7 699 aa16.91■□□□□ 0.3
CLN3-255ENST00000637100 FLNBO75369 2602 aaKnown RBP16.9■□□□□ 0.3
CLN3-255ENST00000637100 ASH1LQ9NR48 2969 aaKnown RBP16.9■□□□□ 0.3
CLN3-255ENST00000637100 PRAMEF26H0Y7S4 382 aa16.9■□□□□ 0.3
CLN3-255ENST00000637100 ATXN7O15265 892 aaPredicted RBP16.9■□□□□ 0.3
CLN3-255ENST00000637100 MED7O43513 233 aa16.9■□□□□ 0.3
CLN3-255ENST00000637100 GIMD1P0DJR0 217 aa16.9■□□□□ 0.3
CLN3-255ENST00000637100 CCR1P32246 355 aa16.9■□□□□ 0.3
CLN3-255ENST00000637100 CNTN1Q12860 1018 aa16.9■□□□□ 0.3
CLN3-255ENST00000637100 PDCLQ13371 301 aa16.9■□□□□ 0.3
CLN3-255ENST00000637100 ZNF211Q13398 564 aaPredicted RBP16.9■□□□□ 0.3
CLN3-255ENST00000637100 RABGAP1LQ5R372 815 aa16.9■□□□□ 0.3
CLN3-255ENST00000637100 ARTNQ5T4W7 220 aa16.9■□□□□ 0.3
CLN3-255ENST00000637100 INTS2Q9H0H0 1204 aaKnown RBP16.9■□□□□ 0.3
CLN3-255ENST00000637100 HOOK1Q9UJC3 728 aaKnown RBP16.9■□□□□ 0.3
CLN3-255ENST00000637100 HS3ST2Q9Y278 367 aa16.9■□□□□ 0.3
CLN3-255ENST00000637100 BICDL2A1A5D9 508 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 BECN2A8MW95 431 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 C1QL1O75973 258 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 LETM1O95202 739 aaPredicted RBP16.89■□□□□ 0.29
CLN3-255ENST00000637100 ZIC2O95409 532 aaPredicted RBP16.89■□□□□ 0.29
CLN3-255ENST00000637100 AFPP02771 609 aaKnown RBP16.89■□□□□ 0.29
CLN3-255ENST00000637100 NUCB2P80303 420 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 CDK17Q00537 523 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 E2F1Q01094 437 aa16.89■□□□□ 0.29
CLN3-255ENST00000637100 INSM1Q01101 510 aaPredicted RBP16.89■□□□□ 0.29
CLN3-255ENST00000637100 AUHQ13825 339 aaKnown RBP16.89■□□□□ 0.29
CLN3-255ENST00000637100 MORC3Q14149 939 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms