RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 CCNB1P14635 433 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 HDCP19113 662 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 NFKB1P19838 968 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 MAGEA3P43357 314 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 SLCO1A2P46721 670 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 MAPKAPK2P49137 400 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 GPX6P59796 221 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 IFI35P80217 286 aaPredicted RBP17.25■□□□□ 0.35
CLN3-252ENST00000636907 SMAD3P84022 425 aaKnown RBP17.25■□□□□ 0.35
CLN3-252ENST00000636907 LONRF1Q17RB8 773 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 AGBL2Q5U5Z8 902 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 LRRC49Q8IUZ0 686 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 CNTD1Q8N815 330 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 ZNF419Q96HQ0 510 aaPredicted RBP17.25■□□□□ 0.35
CLN3-252ENST00000636907 PRICKLE1Q96MT3 831 aaPredicted RBP17.25■□□□□ 0.35
CLN3-252ENST00000636907 TGS1Q96RS0 853 aaKnown RBP17.25■□□□□ 0.35
CLN3-252ENST00000636907 IL12RB2Q99665 862 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 CORO1BQ9BR76 489 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 ROPN1BQ9BZX4 212 aaPredicted RBP17.25■□□□□ 0.35
CLN3-252ENST00000636907 ATXN3LQ9H3M9 355 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 VPS37BQ9H9H4 285 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 ROPN1Q9HAT0 212 aaPredicted RBP17.25■□□□□ 0.35
CLN3-252ENST00000636907 MAN1C1Q9NR34 630 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 BCCIPQ9P287 314 aaKnown RBP eCLIP17.25■□□□□ 0.35
CLN3-252ENST00000636907 IPO11Q9UI26 975 aaKnown RBP17.25■□□□□ 0.35
CLN3-252ENST00000636907 YBX2Q9Y2T7 364 aaKnown RBP17.25■□□□□ 0.35
CLN3-252ENST00000636907 TEX264Q9Y6I9 313 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 ZFP37Q9Y6Q3 630 aaPredicted RBP17.25■□□□□ 0.35
CLN3-252ENST00000636907 MTCL1Q9Y4B5 1905 aaKnown RBP17.25■□□□□ 0.35
CLN3-252ENST00000636907 A0A1W2PRU2 124 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 ARHGAP42A6NI28 874 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 HMGB1P1B2RPK0 211 aaPredicted RBP17.24■□□□□ 0.35
CLN3-252ENST00000636907 TRDMT1O14717 391 aaKnown RBP17.24■□□□□ 0.35
CLN3-252ENST00000636907 RASGRF2O14827 1237 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 CLASP2O75122 1294 aaKnown RBP17.24■□□□□ 0.35
CLN3-252ENST00000636907 RFPL2O75678 378 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 GJA1P17302 382 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 ZXDBP98169 803 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 CDK16Q00536 496 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 CCDC38Q502W7 563 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 ITPRIPL1Q6GPH6 555 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 TIGD7Q6NT04 549 aaPredicted RBP17.24■□□□□ 0.35
CLN3-252ENST00000636907 CROCCP2Q86T23 111 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 MAB21L3Q8N8X9 362 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 ATP11CQ8NB49 1132 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 ADAMTS19Q8TE59 1207 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 XAB2Q9HCS7 855 aaKnown RBP17.24■□□□□ 0.35
CLN3-252ENST00000636907 ASAH2Q9NR71 780 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 HCFC1R1Q9NWW0 138 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 CPQQ9Y646 472 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 MYO18AQ92614 2054 aaKnown RBP17.24■□□□□ 0.35
CLN3-252ENST00000636907 DENND4CQ5VZ89 1909 aa17.24■□□□□ 0.35
CLN3-252ENST00000636907 RAMP2O60895 175 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 EPCAMP16422 314 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 CDC25CP30307 473 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 SSTR1P30872 391 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 OR1E1P30953 314 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 SGSHP51688 502 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 ERVK-21P61565 698 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 SARNPP82979 210 aaKnown RBP17.23■□□□□ 0.35
CLN3-252ENST00000636907 GPM6BQ13491 265 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 STAT4Q14765 748 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 SKIDA1Q1XH10 827 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 RABGAP1LQ5R372 815 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 STXBP5Q5T5C0 1151 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 C6orf118Q5T5N4 469 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 ADGRF1Q5T601 910 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 PALM2Q8IXS6 379 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 MAML1Q92585 1016 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 SAMD11Q96NU1 681 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 PCDHA11Q9Y5I1 949 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 H3BNC9 293 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 J3KR12 359 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 SCAMP3O14828 347 aaKnown RBP17.23■□□□□ 0.35
CLN3-252ENST00000636907 GREM1O60565 184 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 TCEA3O75764 348 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 PEX11BO96011 259 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 PBX2P40425 430 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 CCR2P41597 374 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 CDH4P55283 916 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 RPS24P62847 133 aaKnown RBP17.23■□□□□ 0.35
CLN3-252ENST00000636907 SPARCL1Q14515 664 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 POLD3Q15054 466 aaPredicted RBP17.23■□□□□ 0.35
CLN3-252ENST00000636907 DNAJC21Q5F1R6 531 aaKnown RBP17.23■□□□□ 0.35
CLN3-252ENST00000636907 OTOP3Q7RTS5 596 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 FAM76AQ8TAV0 307 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 GCNAQ96QF7 691 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 MLPHQ9BV36 600 aaPredicted RBP17.23■□□□□ 0.35
CLN3-252ENST00000636907 STOML2Q9UJZ1 356 aa17.23■□□□□ 0.35
CLN3-252ENST00000636907 NOVA2Q9UNW9 492 aaKnown RBP17.23■□□□□ 0.35
CLN3-252ENST00000636907 CACNG3O60359 315 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 TSPAN3O60637 253 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 AP2A1O95782 977 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 LATS1O95835 1130 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 CKMP06732 381 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 MLNP12872 115 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 PHBP35232 272 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 YBEYP58557 167 aaPredicted RBP17.22■□□□□ 0.35
CLN3-252ENST00000636907 SLC7A9P82251 487 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 ANO4Q32M45 955 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms