RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ACMSDQ8TDX5 336 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 ABHD8Q96I13 439 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 CELF6Q96J87 481 aaKnown RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 FBXL18Q96ME1 805 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 CPNE1Q99829 537 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 OXCT2Q9BYC2 517 aaPredicted RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 PRDM12Q9H4Q4 367 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 STN1Q9H668 368 aaKnown RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 PNPLA3Q9NST1 481 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 NUP98P52948 1817 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 CACNA1SQ13698 1873 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 A0A0A0MRY4 1105 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 SPDYE2BA6NHP3 402 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 TRIM38O00635 465 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 ZBTB11O95625 1053 aaPredicted RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 MOCS2O96007 188 aaPredicted RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 SPDYE6P0CI01 402 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 HSPA1AP0DMV8 641 aaKnown RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 HSPA1BP0DMV9 641 aaKnown RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 NFKBIAP25963 317 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 RAB6CQ53S08 254 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 IER5Q5VY09 327 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 DCAF15Q66K64 600 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 OLIG1Q8TAK6 271 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 SPATA13Q96N96 652 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 RAB6CQ9H0N0 254 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 EML4Q9HC35 981 aaKnown RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 LACTBL1A8MY62 500 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 J3QRK9 145 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 S100BP04271 92 aaPredicted RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 ADORA2AP29274 412 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 CNTN2Q02246 1040 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 OLIG2Q13516 323 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 CYP51A1Q16850 503 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 ARL13BQ3SXY8 428 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 ADCK1Q86TW2 530 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 FBXL8Q96CD0 374 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 CCDC97Q96F63 343 aaPredicted RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 FAM167AQ96KS9 214 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 AGAP2Q99490 1192 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 OSBPL11Q9BXB4 747 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 C1orf21Q9H246 121 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 DHX33Q9H6R0 707 aaKnown RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 DDX28Q9NUL7 540 aaKnown RBP11.24□□□□□ -0.61
CLN3-244ENST00000636147 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.24□□□□□ -0.61
CLN3-244ENST00000636147 XPR1Q9UBH6 696 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 FZD1Q9UP38 647 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 RAP2CQ9Y3L5 183 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 RIPK3Q9Y572 518 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 ORC6Q9Y5N6 252 aa11.24□□□□□ -0.61
CLN3-244ENST00000636147 ANKRD33BA6NCL7 494 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 CFAP99D6REC4 459 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 BAIAP3O94812 1187 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 APOA4P06727 396 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 HOXA10P31260 410 aaPredicted RBP11.23□□□□□ -0.61
CLN3-244ENST00000636147 LSM3P62310 102 aaKnown RBP11.23□□□□□ -0.61
CLN3-244ENST00000636147 SLC25A11Q02978 314 aaKnown RBP11.23□□□□□ -0.61
CLN3-244ENST00000636147 KCNJ11Q14654 390 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 CARTPTQ16568 116 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 UGP2Q16851 508 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 DHRSXQ8N5I4 330 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 TMIGD2Q96BF3 282 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 MFSD3Q96ES6 412 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 HMGXB4Q9UGU5 601 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 BAG5Q9UL15 447 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 IMPDH2P12268 514 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 PAMP19021 973 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 ACAT1P24752 427 aaKnown RBP11.23□□□□□ -0.61
CLN3-244ENST00000636147 IRF9Q00978 393 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 DMPKQ09013 629 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 CTBP1Q13363 440 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 EGFLAMQ63HQ2 1017 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 SLC41A1Q8IVJ1 513 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 CMASQ8NFW8 434 aaPredicted RBP11.23□□□□□ -0.61
CLN3-244ENST00000636147 ARMC7Q9H6L4 198 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 DPP3Q9NY33 737 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 UBA6A0AVT1 1052 aaPredicted RBP11.23□□□□□ -0.61
CLN3-244ENST00000636147 CAPN14A8MX76 684 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 CDH3P22223 829 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 HSD17B4P51659 736 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 TNFAIP2Q03169 654 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 CERCAMQ5T4B2 595 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 FBXL19Q6PCT2 694 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 KLHL35Q6PF15 583 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 CAND1Q86VP6 1230 aaKnown RBP11.23□□□□□ -0.61
CLN3-244ENST00000636147 CBR4Q8N4T8 237 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 STRA6Q9BX79 667 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 CXorf21Q9HAI6 301 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 DNAJC28Q9NX36 388 aa11.23□□□□□ -0.61
CLN3-244ENST00000636147 BARX2Q9UMQ3 279 aaPredicted RBP11.23□□□□□ -0.61
CLN3-244ENST00000636147 TRIM43BA6NCK2 446 aa11.22□□□□□ -0.61
CLN3-244ENST00000636147 E7ESA3 106 aa11.22□□□□□ -0.61
CLN3-244ENST00000636147 PDLIM1O00151 329 aa11.22□□□□□ -0.61
CLN3-244ENST00000636147 HUS1O60921 280 aa11.22□□□□□ -0.61
CLN3-244ENST00000636147 H6PDO95479 791 aa11.22□□□□□ -0.61
CLN3-244ENST00000636147 CLIC3O95833 236 aa11.22□□□□□ -0.61
CLN3-244ENST00000636147 DHRS4L1P0CG22 281 aa11.22□□□□□ -0.61
CLN3-244ENST00000636147 CRY2Q49AN0 593 aa11.22□□□□□ -0.61
CLN3-244ENST00000636147 ZNF618Q5T7W0 954 aa11.22□□□□□ -0.61
CLN3-244ENST00000636147 MBLAC2Q68D91 279 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms