RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 MYO19Q96H55 970 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 RPL10LQ96L21 214 aaKnown RBP21.25■□□□□ 0.99
CLN3-240ENST00000631023 SPTLC3Q9NUV7 552 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 TMEM248Q9NWD8 314 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 ZNF212Q9UDV6 495 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 LCMT1Q9UIC8 334 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 USP18Q9UMW8 372 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 AP4E1Q9UPM8 1137 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 NYNRINQ9P2P1 1898 aaKnown RBP21.25■□□□□ 0.99
CLN3-240ENST00000631023 DMDP11532 3685 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 EPHB2P29323 1055 aa21.24■□□□□ 0.99
CLN3-240ENST00000631023 P2RY2P41231 377 aa21.24■□□□□ 0.99
CLN3-240ENST00000631023 VASPP50552 380 aaPredicted RBP21.24■□□□□ 0.99
CLN3-240ENST00000631023 HNRNPA1L2Q32P51 320 aaKnown RBP21.24■□□□□ 0.99
CLN3-240ENST00000631023 LAIR1Q6GTX8 287 aa21.24■□□□□ 0.99
CLN3-240ENST00000631023 KIAA1324Q6UXG2 1013 aaKnown RBP21.24■□□□□ 0.99
CLN3-240ENST00000631023 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.24■□□□□ 0.99
CLN3-240ENST00000631023 NIPA2Q8N8Q9 360 aa21.24■□□□□ 0.99
CLN3-240ENST00000631023 ZNF564Q8TBZ8 553 aaPredicted RBP21.24■□□□□ 0.99
CLN3-240ENST00000631023 ZC3H10Q96K80 434 aaKnown RBP21.24■□□□□ 0.99
CLN3-240ENST00000631023 PANX2Q96RD6 677 aa21.24■□□□□ 0.99
CLN3-240ENST00000631023 PACSIN1Q9BY11 444 aa21.24■□□□□ 0.99
CLN3-240ENST00000631023 MKRN2Q9H000 416 aaKnown RBP21.24■□□□□ 0.99
CLN3-240ENST00000631023 CATSPERBQ9H7T0 1116 aa21.24■□□□□ 0.99
CLN3-240ENST00000631023 PRSS16Q9NQE7 514 aa21.24■□□□□ 0.99
CLN3-240ENST00000631023 DONSONQ9NYP3 566 aa21.24■□□□□ 0.99
CLN3-240ENST00000631023 SLCO3A1Q9UIG8 710 aa21.24■□□□□ 0.99
CLN3-240ENST00000631023 INVSQ9Y283 1065 aa21.24■□□□□ 0.99
CLN3-240ENST00000631023 TARSL2A2RTX5 802 aaKnown RBP21.23■□□□□ 0.99
CLN3-240ENST00000631023 MAP3K13O43283 966 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 TMEM253P0C7T8 217 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 NUMBP49757 651 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 GNA12Q03113 381 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 ELF2Q15723 593 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 BOLA3Q53S33 107 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 METTL3Q86U44 580 aaKnown RBP21.23■□□□□ 0.99
CLN3-240ENST00000631023 DCAF4L2Q8NA75 395 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 RLN3Q8WXF3 142 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 PRCCQ92733 491 aaPredicted RBP21.23■□□□□ 0.99
CLN3-240ENST00000631023 SIPA1Q96FS4 1042 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 DHX35Q9H5Z1 703 aaKnown RBP21.23■□□□□ 0.99
CLN3-240ENST00000631023 GMEB2Q9UKD1 530 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 PI4KAP42356 2102 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 USP34Q70CQ2 3546 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 A0A0D9SEW6 157 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 EDDM13A0A1B0GTR0 161 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 TTC34A8MYJ7 566 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 DCLK1O15075 740 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 FGF10O15520 208 aaPredicted RBP21.23■□□□□ 0.99
CLN3-240ENST00000631023 RHOBTB1O94844 696 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 ACADMP11310 421 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 ZNF135P52742 658 aaPredicted RBP21.23■□□□□ 0.99
CLN3-240ENST00000631023 TPI1P60174 286 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 SEMA3BQ13214 749 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 LPAL2Q16609 132 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 KBTBD6Q86V97 674 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 NLRP14Q86W24 1093 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 CCDC170Q8IYT3 715 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 FAM160A2Q8N612 972 aaPredicted RBP21.23■□□□□ 0.99
CLN3-240ENST00000631023 RUBCNQ92622 972 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 HINFPQ9BQA5 517 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 SPON2Q9BUD6 331 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 SNRNP25Q9BV90 132 aaKnown RBP21.23■□□□□ 0.99
CLN3-240ENST00000631023 NCDNQ9UBB6 729 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 DNAI1Q9UI46 699 aa21.23■□□□□ 0.99
CLN3-240ENST00000631023 RNASEH1O60930 286 aaKnown RBP21.22■□□□□ 0.99
CLN3-240ENST00000631023 STK19P49842 368 aaPredicted RBP21.22■□□□□ 0.99
CLN3-240ENST00000631023 COPAP53621 1224 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 MAP7D1Q3KQU3 841 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 PLK5Q496M5 336 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 ACCSLQ4AC99 568 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 RETSATQ6NUM9 610 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 RTL3Q8N8U3 475 aaKnown RBP21.22■□□□□ 0.99
CLN3-240ENST00000631023 LOXL4Q96JB6 756 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 BTBD6Q96KE9 485 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 PEBP4Q96S96 227 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 PSMB7Q99436 277 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 SLC6A17Q9H1V8 727 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 MAGEH1Q9H213 219 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 GPATCH2LQ9NWQ4 482 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 VPS51Q9UID3 782 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 INTUQ9ULD6 942 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 NEU3Q9UQ49 428 aa21.22■□□□□ 0.99
CLN3-240ENST00000631023 EEF2KO00418 725 aaKnown RBP21.21■□□□□ 0.99
CLN3-240ENST00000631023 CDC25BP30305 580 aa21.21■□□□□ 0.99
CLN3-240ENST00000631023 IL31Q6EBC2 164 aa21.21■□□□□ 0.99
CLN3-240ENST00000631023 SLC36A4Q6YBV0 504 aa21.21■□□□□ 0.99
CLN3-240ENST00000631023 OR7D4Q8NG98 312 aa21.21■□□□□ 0.99
CLN3-240ENST00000631023 ATP13A1Q9HD20 1204 aa21.21■□□□□ 0.99
CLN3-240ENST00000631023 LUC7LQ9NQ29 371 aaKnown RBP21.21■□□□□ 0.99
CLN3-240ENST00000631023 IMPACTQ9P2X3 320 aa21.21■□□□□ 0.99
CLN3-240ENST00000631023 HPCAL4Q9UM19 191 aa21.21■□□□□ 0.99
CLN3-240ENST00000631023 HS3ST2Q9Y278 367 aa21.21■□□□□ 0.99
CLN3-240ENST00000631023 NUMA1Q14980 2115 aa21.21■□□□□ 0.99
CLN3-240ENST00000631023 FRYLO94915 3013 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 CBX4O00257 560 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 DAPK3O43293 454 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 ATP9BO43861 1147 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 SNAP91O60641 907 aa21.2■□□□□ 0.98
CLN3-240ENST00000631023 RAMP2O60895 175 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms