RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 SYNCQ9H7C4 482 aa13.04□□□□□ -0.32
PNKP-217ENST00000625216 FBRSQ9HAH7 460 aa13.04□□□□□ -0.32
PNKP-217ENST00000625216 METTL5Q9NRN9 209 aaKnown RBP13.04□□□□□ -0.32
PNKP-217ENST00000625216 RXFP3Q9NSD7 469 aa13.04□□□□□ -0.32
PNKP-217ENST00000625216 RRN3Q9NYV6 651 aa13.04□□□□□ -0.32
PNKP-217ENST00000625216 SUN2Q9UH99 717 aa13.04□□□□□ -0.32
PNKP-217ENST00000625216 PACSIN2Q9UNF0 486 aaPredicted RBP13.04□□□□□ -0.32
PNKP-217ENST00000625216 CYP8B1Q9UNU6 501 aa13.04□□□□□ -0.32
PNKP-217ENST00000625216 MYO18AQ92614 2054 aaKnown RBP13.04□□□□□ -0.32
PNKP-217ENST00000625216 MED19A0JLT2 244 aaPredicted RBP13.03□□□□□ -0.32
PNKP-217ENST00000625216 KCNU1A8MYU2 1149 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 NDUFS2O75306 463 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 ASLP04424 464 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 CD6P30203 668 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 CCR1P32246 355 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 NOS2P35228 1153 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 SGSHP51688 502 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 RPL7AP62424 266 aaKnown RBP13.03□□□□□ -0.32
PNKP-217ENST00000625216 SLC6A3Q01959 620 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 OGDHQ02218 1023 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 ZNF33AQ06730 810 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 CAMK2GQ13555 558 aaPredicted RBP13.03□□□□□ -0.32
PNKP-217ENST00000625216 MESDQ14696 234 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 TAF5Q15542 800 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 SYCP2LQ5T4T6 812 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 FAM102AQ5T9C2 384 aaPredicted RBP13.03□□□□□ -0.32
PNKP-217ENST00000625216 MEI1Q5TIA1 1274 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 DAB2IPQ5VWQ8 1189 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 OR6B2Q6IFH4 312 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 TCEAL6Q6IPX3 200 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 TRNP1Q6NT89 227 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 SLC23A3Q6PIS1 610 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 SLC26A9Q7LBE3 791 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 DAAM2Q86T65 1068 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 NT5DC3Q86UY8 548 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 DEFB106AQ8N104 65 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 KDM1BQ8NB78 822 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 OR2T3Q8NH03 318 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 SORCS1Q8WY21 1168 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 TCEAL3Q969E4 200 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 TTC17Q96AE7 1141 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 ZNF419Q96HQ0 510 aaPredicted RBP13.03□□□□□ -0.32
PNKP-217ENST00000625216 LMLNQ96KR4 655 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 EDEM2Q9BV94 578 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 SELENOOQ9BVL4 669 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 MKRN2Q9H000 416 aaKnown RBP13.03□□□□□ -0.32
PNKP-217ENST00000625216 MRPL47Q9HD33 250 aaKnown RBP13.03□□□□□ -0.32
PNKP-217ENST00000625216 PARVAQ9NVD7 372 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 STIM2Q9P246 746 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 USP36Q9P275 1121 aaKnown RBP13.03□□□□□ -0.32
PNKP-217ENST00000625216 PILRBQ9UKJ0 227 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 JRKLQ9Y4A0 524 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 ABCA7Q8IZY2 2146 aa13.03□□□□□ -0.32
PNKP-217ENST00000625216 LNP1A1A4G5 178 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 TMEM191CA6NGB0 347 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 URI1O94763 535 aaPredicted RBP13.02□□□□□ -0.33
PNKP-217ENST00000625216 MOCS2O96007 188 aaPredicted RBP13.02□□□□□ -0.33
PNKP-217ENST00000625216 IGLV3-19P01714 112 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 ACADMP11310 421 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 ITPKAP23677 461 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 PRKCHP24723 683 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 CD70P32970 193 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 SCNN1AP37088 669 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 COPAP53621 1224 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 OXCT1P55809 520 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 ST8SIA6P61647 398 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 RPS24P62847 133 aaKnown RBP13.02□□□□□ -0.33
PNKP-217ENST00000625216 IRX4P78413 519 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 ZBTB16Q05516 673 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 SLC12A1Q13621 1099 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 CDH18Q13634 790 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 DUOXA1Q1HG43 343 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 FNDC3BQ53EP0 1204 aaKnown RBP13.02□□□□□ -0.33
PNKP-217ENST00000625216 TRIM61Q5EBN2 209 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 PAPD7Q5XG87 772 aaKnown RBP13.02□□□□□ -0.33
PNKP-217ENST00000625216 ARMCX6Q7L4S7 300 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 SYCE1Q8N0S2 351 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 EMC1Q8N766 993 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 CADM4Q8NFZ8 388 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 RNF34Q969K3 372 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 CALR3Q96L12 384 aaKnown RBP13.02□□□□□ -0.33
PNKP-217ENST00000625216 PRICKLE1Q96MT3 831 aaPredicted RBP13.02□□□□□ -0.33
PNKP-217ENST00000625216 FAM204AQ9H8W3 233 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 TMEM9BQ9NQ34 198 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 TMEM74BQ9NUR3 256 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 DDIT4Q9NX09 232 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 WSB2Q9NYS7 404 aaPredicted RBP13.02□□□□□ -0.33
PNKP-217ENST00000625216 KIAA1522Q9P206 1035 aaPredicted RBP13.02□□□□□ -0.33
PNKP-217ENST00000625216 SLC6A14Q9UN76 642 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 ALG6Q9Y672 507 aa13.02□□□□□ -0.33
PNKP-217ENST00000625216 EML5Q05BV3 1969 aa13.01□□□□□ -0.33
PNKP-217ENST00000625216 SIGLEC16A6NMB1 481 aa13.01□□□□□ -0.33
PNKP-217ENST00000625216 C4orf47A7E2U8 309 aa13.01□□□□□ -0.33
PNKP-217ENST00000625216 F5H5T6 163 aa13.01□□□□□ -0.33
PNKP-217ENST00000625216 H0Y626 953 aa13.01□□□□□ -0.33
PNKP-217ENST00000625216 DDX3YO15523 660 aaKnown RBP13.01□□□□□ -0.33
PNKP-217ENST00000625216 DAB1O75553 588 aa13.01□□□□□ -0.33
PNKP-217ENST00000625216 PROSCO94903 275 aa13.01□□□□□ -0.33
PNKP-217ENST00000625216 LUC7L3O95232 432 aaKnown RBP13.01□□□□□ -0.33
PNKP-217ENST00000625216 TACR2P21452 398 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms