RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 TRIM42Q8IWZ5 723 aa16.71■□□□□ 0.27
LDB3-208ENST00000623007 SLC39A11Q8N1S5 342 aa16.71■□□□□ 0.27
LDB3-208ENST00000623007 APOPT1Q96IL0 206 aa16.71■□□□□ 0.27
LDB3-208ENST00000623007 AGAP3Q96P47 875 aa16.71■□□□□ 0.27
LDB3-208ENST00000623007 VPS11Q9H270 941 aa16.71■□□□□ 0.27
LDB3-208ENST00000623007 VPS45Q9NRW7 570 aa16.71■□□□□ 0.27
LDB3-208ENST00000623007 SPG21Q9NZD8 308 aa16.71■□□□□ 0.27
LDB3-208ENST00000623007 SLC27A5Q9Y2P5 690 aa16.71■□□□□ 0.27
LDB3-208ENST00000623007 GREB1Q4ZG55 1949 aa16.71■□□□□ 0.27
LDB3-208ENST00000623007 ZNF638Q14966 1978 aaKnown RBP16.7■□□□□ 0.26
LDB3-208ENST00000623007 SLC12A8A0AV02 714 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 NT5C1B-RDH14C9J2C7 533 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 KIAA0355O15063 1070 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 UPP2O95045 317 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 MOCS2O96007 188 aaPredicted RBP16.7■□□□□ 0.26
LDB3-208ENST00000623007 JCHAINP01591 159 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 URODP06132 367 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 OR1D2P34982 312 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 SLC11A2P49281 568 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 HARS2P49590 506 aaKnown RBP16.7■□□□□ 0.26
LDB3-208ENST00000623007 MPP3Q13368 585 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 DBN1Q16643 649 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 PDK4Q16654 411 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 C5orf22Q49AR2 442 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 TMCO4Q5TGY1 634 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 SDHAF4Q5VUM1 108 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.7■□□□□ 0.26
LDB3-208ENST00000623007 PIGWQ7Z7B1 504 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 BANPQ8N9N5 519 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 ATP2A3Q93084 1043 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 SEC16BQ96JE7 1060 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 TGS1Q96RS0 853 aaKnown RBP16.7■□□□□ 0.26
LDB3-208ENST00000623007 SLC39A8Q9C0K1 460 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 TRPM5Q9NZQ8 1165 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 TET1Q8NFU7 2136 aa16.7■□□□□ 0.26
LDB3-208ENST00000623007 MYCP01106 439 aaPredicted RBP16.69■□□□□ 0.26
LDB3-208ENST00000623007 C1QAP02745 245 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 ALADP13716 330 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 NFKB1P19838 968 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 MGAT1P26572 445 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 HADHAP40939 763 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 ZBTB17Q13105 803 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 RAB33AQ14088 237 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 CRYMQ14894 314 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 TAF12Q16514 161 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 HECTD3Q5T447 861 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 SYCP2LQ5T4T6 812 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 STXBP5Q5T5C0 1151 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 PIK3R6Q5UE93 754 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 PRSS55Q6UWB4 352 aaPredicted RBP16.69■□□□□ 0.26
LDB3-208ENST00000623007 TMEM135Q86UB9 458 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 ZNF683Q8IZ20 524 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 AGGF1Q8N302 714 aaeCLIP16.69■□□□□ 0.26
LDB3-208ENST00000623007 CCDC33Q8N5R6 958 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 MGARPQ8TDB4 240 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 CELF6Q96J87 481 aaKnown RBP16.69■□□□□ 0.26
LDB3-208ENST00000623007 NACA2Q9H009 215 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 GLOD4Q9HC38 313 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 F5H5T6 163 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 LPXNO60711 386 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 VNN2O95498 520 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 LATS1O95835 1130 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 CREB1P16220 341 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 ELF1P32519 619 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 CD68P34810 354 aaPredicted RBP16.69■□□□□ 0.26
LDB3-208ENST00000623007 SESN2P58004 480 aaPredicted RBP16.69■□□□□ 0.26
LDB3-208ENST00000623007 BTG3Q14201 252 aaPredicted RBP16.69■□□□□ 0.26
LDB3-208ENST00000623007 EFTUD2Q15029 972 aaKnown RBP eCLIP16.69■□□□□ 0.26
LDB3-208ENST00000623007 RABGAP1LQ5R372 815 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 COL13A1Q5TAT6 717 aaPredicted RBP16.69■□□□□ 0.26
LDB3-208ENST00000623007 POTEHQ6S545 545 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 RSPO2Q6UXX9 243 aaPredicted RBP16.69■□□□□ 0.26
LDB3-208ENST00000623007 NECAB2Q7Z6G3 386 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 ITIH5Q86UX2 942 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 BBS5Q8N3I7 341 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 TTC9BQ8N6N2 239 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.69■□□□□ 0.26
LDB3-208ENST00000623007 ZSCAN18Q8TBC5 510 aaPredicted RBP16.69■□□□□ 0.26
LDB3-208ENST00000623007 LRRC8CQ8TDW0 803 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 LRRN4Q8WUT4 740 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 ARNTL2Q8WYA1 636 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 B3GALT6Q96L58 329 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 ZNF512Q96ME7 567 aaPredicted RBP16.69■□□□□ 0.26
LDB3-208ENST00000623007 ZNF599Q96NL3 588 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 CPNE1Q99829 537 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 RC3H2Q9HBD1 1191 aaKnown RBP16.69■□□□□ 0.26
LDB3-208ENST00000623007 MRM3Q9HC36 420 aaKnown RBP16.69■□□□□ 0.26
LDB3-208ENST00000623007 IPO11Q9UI26 975 aaKnown RBP16.69■□□□□ 0.26
LDB3-208ENST00000623007 SNX10Q9Y5X0 201 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 FAM169AQ9Y6X4 670 aa16.69■□□□□ 0.26
LDB3-208ENST00000623007 TCP11X1B4DZS4 312 aa16.68■□□□□ 0.26
LDB3-208ENST00000623007 ATF6P18850 670 aa16.68■□□□□ 0.26
LDB3-208ENST00000623007 IL10RBQ08334 325 aa16.68■□□□□ 0.26
LDB3-208ENST00000623007 NIPAL4Q0D2K0 466 aa16.68■□□□□ 0.26
LDB3-208ENST00000623007 LAMB3Q13751 1172 aa16.68■□□□□ 0.26
LDB3-208ENST00000623007 PABPC1LQ4VXU2 614 aaKnown RBP16.68■□□□□ 0.26
LDB3-208ENST00000623007 GRTP1Q5TC63 336 aa16.68■□□□□ 0.26
LDB3-208ENST00000623007 RASIP1Q5U651 963 aa16.68■□□□□ 0.26
LDB3-208ENST00000623007 TMEM173Q86WV6 379 aaPredicted RBP16.68■□□□□ 0.26
LDB3-208ENST00000623007 CHSY1Q86X52 802 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms