RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CCNB1P14635 433 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 MX2P20592 715 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 CPA2P48052 419 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 AIF1P55008 147 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 HSF5Q4G112 596 aaPredicted RBP10.85□□□□□ -0.67
CUX1-221ENST00000622516 FASTKD1Q53R41 847 aaKnown RBP10.85□□□□□ -0.67
CUX1-221ENST00000622516 ATG14Q6ZNE5 492 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 SLC24A5Q71RS6 500 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 SLC7A6OSQ96CW6 309 aaPredicted RBP10.85□□□□□ -0.67
CUX1-221ENST00000622516 MTBPQ96DY7 904 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 UNKQ9C0B0 810 aaKnown RBP10.85□□□□□ -0.67
CUX1-221ENST00000622516 GBA3Q9H227 469 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 CXorf56Q9H5V9 222 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 C20orf96Q9NUD7 363 aaPredicted RBP10.85□□□□□ -0.67
CUX1-221ENST00000622516 ARL8BQ9NVJ2 186 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 TMEM216Q9P0N5 145 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 DSEQ9UL01 958 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 NEU3Q9UQ49 428 aa10.85□□□□□ -0.67
CUX1-221ENST00000622516 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.85□□□□□ -0.67
CUX1-221ENST00000622516 SF3B1O75533 1304 aaKnown RBP eCLIP10.85□□□□□ -0.674e-6■■■■■ 58.5
CUX1-221ENST00000622516 ZCWPW2A0A1B0GU75 182 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 CFAP73A6NFT4 308 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 PMPCBO75439 489 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 GSRP00390 522 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 GSTA2P09210 222 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 CCR1P32246 355 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 CRHR1P34998 444 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 SERPINB6P35237 376 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 CCNFP41002 786 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 HCAR3P49019 387 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 IRF9Q00978 393 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 CCDC15Q0P6D6 951 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 ANKRD20A4Q4UJ75 823 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 NOMO2Q5JPE7 1267 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 KCTD11Q693B1 232 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 MARK2Q7KZI7 788 aaKnown RBP10.84□□□□□ -0.67
CUX1-221ENST00000622516 ARHGAP12Q8IWW6 846 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 PLD6Q8N2A8 252 aaKnown RBP10.84□□□□□ -0.67
CUX1-221ENST00000622516 RAET1EQ8TD07 263 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 RGS18Q9NS28 235 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 IARS2Q9NSE4 1012 aaKnown RBP10.84□□□□□ -0.67
CUX1-221ENST00000622516 ABCC13Q9NSE7 274 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 MTO1Q9Y2Z2 717 aaKnown RBP10.84□□□□□ -0.67
CUX1-221ENST00000622516 HS3ST4Q9Y661 456 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 NCAM2O15394 837 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 BPGMP07738 259 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 SERPINB9P50453 376 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 AQP5P55064 265 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 EFEMP1Q12805 493 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 CBLBQ13191 982 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 PCSK7Q16549 785 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 FAM171A1Q5VUB5 890 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 FSTL4Q6MZW2 842 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 TRAF7Q6Q0C0 670 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 COLGALT2Q8IYK4 626 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 DCLK2Q8N568 766 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 ATPAF2Q8N5M1 289 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.84□□□□□ -0.67
CUX1-221ENST00000622516 IRGQQ8WZA9 623 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 FAM193BQ96PV7 902 aaPredicted RBP10.84□□□□□ -0.67
CUX1-221ENST00000622516 EBF4Q9BQW3 602 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 GPR62Q9BZJ7 368 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 NMUR2Q9GZQ4 415 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 LRRC40Q9H9A6 602 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 TXLNGQ9NUQ3 528 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 RRN3Q9NYV6 651 aa10.84□□□□□ -0.67
CUX1-221ENST00000622516 CHRNA4P43681 627 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 MAXP61244 160 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 CTC1Q2NKJ3 1217 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 VARS2Q5ST30 1063 aaKnown RBP10.83□□□□□ -0.68
CUX1-221ENST00000622516 C4orf50Q6ZRC1 276 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 ZNF354CQ86Y25 554 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 AGAP11Q8TF27 550 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 TBC1D10AQ9BXI6 508 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 CASS4Q9NQ75 786 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 STARD7Q9NQZ5 370 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 GMIPQ9P107 970 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 SIRPGQ9P1W8 387 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 DNAJC6O75061 913 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 IGLV3-25P01717 112 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 MAPRE1Q15691 268 aaKnown RBP10.83□□□□□ -0.68
CUX1-221ENST00000622516 TMEM135Q86UB9 458 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 LONP2Q86WA8 852 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 CIR1Q86X95 450 aaPredicted RBP10.83□□□□□ -0.68
CUX1-221ENST00000622516 C10orf107Q8IVU9 208 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 AGR3Q8TD06 166 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 SNX15Q9NRS6 342 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 ARHGEF38Q9NXL2 777 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 CPSF2Q9P2I0 782 aaKnown RBP10.83□□□□□ -0.68
CUX1-221ENST00000622516 SRRDQ9UH36 339 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 A0A1W2PQ45 241 aaPredicted RBP10.83□□□□□ -0.68
CUX1-221ENST00000622516 A0A1W2PQY0 241 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 E9PAM4 449 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 MAFKO60675 156 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 CNTN5O94779 1100 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 PRKCGP05129 697 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 AVPR1AP37288 418 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 GP5P40197 560 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 ERFP50548 548 aa10.83□□□□□ -0.68
CUX1-221ENST00000622516 STX3Q13277 289 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms