RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 MRPL28Q13084 256 aaKnown RBP14.25□□□□□ -0.13
CPSF1-212ENST00000616140 ACVR2BQ13705 512 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 SCARA3Q6AZY7 606 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 ZNF467Q7Z7K2 595 aaPredicted RBP14.25□□□□□ -0.13
CPSF1-212ENST00000616140 CLVS1Q8IUQ0 354 aaPredicted RBP14.25□□□□□ -0.13
CPSF1-212ENST00000616140 TRAPPC9Q96Q05 1148 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 MECRQ9BV79 373 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 TSC22D4Q9Y3Q8 395 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 IRF6O14896 467 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 DDX3YO15523 660 aaKnown RBP14.24□□□□□ -0.13
CPSF1-212ENST00000616140 MYL4P12829 197 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 MLNP12872 115 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 ERCC2P18074 760 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 PBLDP30039 288 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-212ENST00000616140 LRPAP1P30533 357 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 KPNA1P52294 538 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-212ENST00000616140 RIOX2Q8IUF8 465 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 CCDC103Q8IW40 242 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 ZNF670Q9BS34 389 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 MTIF3Q9H2K0 278 aaKnown RBP14.24□□□□□ -0.13
CPSF1-212ENST00000616140 ALG9Q9H6U8 611 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 LYPLA2O95372 231 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 DLGAP3O95886 979 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 RPLP2P05387 115 aaKnown RBP14.24□□□□□ -0.13
CPSF1-212ENST00000616140 CCDC166P0CW27 439 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 ZNF7P17097 686 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-212ENST00000616140 SERPINH1P50454 418 aaKnown RBP14.24□□□□□ -0.13
CPSF1-212ENST00000616140 SREBF2Q12772 1141 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 MSLNQ13421 630 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-212ENST00000616140 XRCC4Q13426 336 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 PTPN20Q4JDL3 420 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 PLEKHM3Q6ZWE6 761 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 NECAB2Q7Z6G3 386 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 MARK4Q96L34 752 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 LRMDAQ9H2I8 198 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 SH3BP4Q9P0V3 963 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 MYOM1P52179 1685 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 RASSF9O75901 435 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 LCA5LO95447 670 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 URODP06132 367 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 HSMCR30P0CW71 290 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 PSMB9P28065 219 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 NCALDP61601 193 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 CNTN1Q12860 1018 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 CAMK2GQ13555 558 aaPredicted RBP14.24□□□□□ -0.13
CPSF1-212ENST00000616140 PFKFB4Q16877 469 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 GLT6D1Q7Z4J2 308 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 DHRSXQ8N5I4 330 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 ANKRD52Q8NB46 1076 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 OR56A4Q8NGH8 313 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 OMDQ99983 421 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 MYRFQ9Y2G1 1151 aa14.24□□□□□ -0.13
CPSF1-212ENST00000616140 CCDC154A6NI56 674 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 HOXA2O43364 376 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 ITGA2BP08514 1039 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 ATP4AP20648 1035 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 PSEN2P49810 448 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 SCNN1GP51170 649 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 EML3Q32P44 896 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 PCID2Q5JVF3 399 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 LGI2Q8N0V4 545 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 BHLHE22Q8NFJ8 381 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-212ENST00000616140 SPPL2AQ8TCT8 520 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 MPP4Q96JB8 637 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 EMILIN2Q9BXX0 1053 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 PAIP1Q9H074 479 aaKnown RBP14.23□□□□□ -0.13
CPSF1-212ENST00000616140 SLC17A7Q9P2U7 560 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 COG5Q9UP83 839 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 SPATA31C2B4DYI2 1134 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 PTGES3LE9PB15 166 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 RAD51BO15315 384 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 HDAC3O15379 428 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 SEC22BO75396 215 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 CCNE2O96020 404 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 IMPDH2P12268 514 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 FGFR3P22607 806 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 GSSP48637 474 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 RAB27AP51159 221 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 ZNF135P52742 658 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-212ENST00000616140 BEX3Q00994 111 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 BOP1Q14137 746 aaKnown RBP14.23□□□□□ -0.13
CPSF1-212ENST00000616140 C16orf72Q14CZ0 275 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 NPY5RQ15761 445 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 SLC39A12Q504Y0 691 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 ACBD5Q5T8D3 534 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-212ENST00000616140 EFCAB3Q8N7B9 438 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 LRRC57Q8N9N7 239 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 NR2E1Q9Y466 385 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 TSHRP16473 764 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 FMO4P31512 558 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 CHI3L1P36222 383 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-212ENST00000616140 PRMT9Q6P2P2 845 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 ARCQ7LC44 396 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 UTP15Q8TED0 518 aaKnown RBP14.23□□□□□ -0.13
CPSF1-212ENST00000616140 BTN2A2Q8WVV5 523 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 PAWRQ96IZ0 340 aaKnown RBP14.23□□□□□ -0.13
CPSF1-212ENST00000616140 CACNA2D2Q9NY47 1150 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 MARCH2Q9P0N8 246 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 ZMYM5Q9UJ78 669 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 UMODL1Q5DID0 1318 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms