RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 SERPINB11Q96P15 392 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 SEPT5Q99719 369 aaPredicted RBP14.78□□□□□ -0.04
VRK3-217ENST00000599538 FBXO44Q9H4M3 255 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 NOL6Q9H6R4 1146 aaKnown RBP14.78□□□□□ -0.04
VRK3-217ENST00000599538 CHRAC1Q9NRG0 131 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 IL37Q9NZH6 218 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 PLLPQ9Y342 182 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 GREB1Q4ZG55 1949 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 ZCWPW2A0A1B0GU75 182 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 TBC1D4O60343 1298 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 MAGEA11P43364 429 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 SERPINB4P48594 390 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 NUMBP49757 651 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 TAF10Q12962 218 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 DUSP4Q13115 394 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 GALNTL6Q49A17 601 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 LGSNQ5TDP6 509 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 MSANTD2Q6P1R3 559 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 TFAP2DQ7Z6R9 452 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 ZNF683Q8IZ20 524 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 ATPAF2Q8N5M1 289 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 ARMC2Q8NEN0 867 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 FBXO32Q969P5 355 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 AZIN2Q96A70 460 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 CERS2Q96G23 380 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 TSGA13Q96PP4 275 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 AGAP2Q99490 1192 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 PPP1R12CQ9BZL4 782 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 ACTR5Q9H9F9 607 aaPredicted RBP14.78□□□□□ -0.04
VRK3-217ENST00000599538 KLHL14Q9P2G3 628 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 TLR6Q9Y2C9 796 aa14.78□□□□□ -0.04
VRK3-217ENST00000599538 H0YHG0 523 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 CNTN5O94779 1100 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 POLBP06746 335 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 HMBSP08397 361 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 CCNCP24863 283 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 YWHAQP27348 245 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 ABCG1P45844 678 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 PAPOLAP51003 745 aaKnown RBP14.77□□□□□ -0.04
VRK3-217ENST00000599538 TBX4P57082 545 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 ALFQ53S48 1182 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 MS4A13Q5J8X5 152 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 RNF43Q68DV7 783 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 ITPRIPL1Q6GPH6 555 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 DEFB128Q7Z7B8 93 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 TMEM135Q86UB9 458 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 NPAS4Q8IUM7 802 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 GIPC2Q8TF65 315 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 C10orf82Q8WW14 230 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 VAT1Q99536 393 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 CATSPERBQ9H7T0 1116 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 NPHS2Q9NP85 383 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 HAUS2Q9NVX0 235 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 NUMBLQ9Y6R0 609 aa14.77□□□□□ -0.04
VRK3-217ENST00000599538 FNDC1Q4ZHG4 1894 aaPredicted RBP14.77□□□□□ -0.05
VRK3-217ENST00000599538 DOCK4Q8N1I0 1966 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 FAM92AA1XBS5 289 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 OR6C75A6NL08 312 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 PITPNM1O00562 1244 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 FGF10O15520 208 aaPredicted RBP14.77□□□□□ -0.05
VRK3-217ENST00000599538 CACNG3O60359 315 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 UPP2O95045 317 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 RPL17P18621 184 aaKnown RBP14.77□□□□□ -0.05
VRK3-217ENST00000599538 GPR17Q13304 367 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 AFMIDQ63HM1 303 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.77□□□□□ -0.05
VRK3-217ENST00000599538 RASSF3Q86WH2 238 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 CHSY1Q86X52 802 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 CCNJLQ8IV13 435 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 RTL3Q8N8U3 475 aaKnown RBP14.77□□□□□ -0.05
VRK3-217ENST00000599538 RFWD2Q8NHY2 731 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 MTBPQ96DY7 904 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 MYEOVQ96EZ4 313 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 IL12RB2Q99665 862 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 NAT9Q9BTE0 207 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 ZNF395Q9H8N7 513 aaPredicted RBP14.77□□□□□ -0.05
VRK3-217ENST00000599538 LRRC40Q9H9A6 602 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.77□□□□□ -0.05
VRK3-217ENST00000599538 BFARQ9NZS9 450 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 ZFATQ9P243 1243 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 CHKBQ9Y259 395 aa14.77□□□□□ -0.05
VRK3-217ENST00000599538 E2F8A0AVK6 867 aa14.76□□□□□ -0.05
VRK3-217ENST00000599538 GOLGA8TH3BQL2 631 aa14.76□□□□□ -0.05
VRK3-217ENST00000599538 TPP1O14773 563 aa14.76□□□□□ -0.05
VRK3-217ENST00000599538 HLA-DQB2P05538 268 aa14.76□□□□□ -0.05
VRK3-217ENST00000599538 SERPINB9P50453 376 aa14.76□□□□□ -0.05
VRK3-217ENST00000599538 IRX4P78413 519 aa14.76□□□□□ -0.05
VRK3-217ENST00000599538 ANKRD20A4Q4UJ75 823 aa14.76□□□□□ -0.05
VRK3-217ENST00000599538 C16orf46Q6P387 395 aa14.76□□□□□ -0.05
VRK3-217ENST00000599538 ATXN7L3BQ96GX2 97 aa14.76□□□□□ -0.05
VRK3-217ENST00000599538 IQCGQ9H095 443 aaKnown RBP14.76□□□□□ -0.05
VRK3-217ENST00000599538 CCSER2Q9H7U1 834 aa14.76□□□□□ -0.05
VRK3-217ENST00000599538 RXFP1Q9HBX9 757 aa14.76□□□□□ -0.05
VRK3-217ENST00000599538 PAK6Q9NQU5 681 aaPredicted RBP14.76□□□□□ -0.05
VRK3-217ENST00000599538 DCTN4Q9UJW0 460 aa14.76□□□□□ -0.05
VRK3-217ENST00000599538 ERI2A8K979 691 aaKnown RBP14.75□□□□□ -0.05
VRK3-217ENST00000599538 MATN3O15232 486 aa14.75□□□□□ -0.05
VRK3-217ENST00000599538 ITGA2BP08514 1039 aa14.75□□□□□ -0.05
VRK3-217ENST00000599538 ATF6P18850 670 aa14.75□□□□□ -0.05
VRK3-217ENST00000599538 NMBRP28336 390 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms