RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 LY6G6EA0A0G2JKS1 128 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 C1QTNF3-AMACRE9PGA6 284 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 SCAMP1O15126 338 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 GIMD1P0DJR0 217 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 KRT10P13645 584 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 LCP1P13796 627 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 PSMC2P35998 433 aaKnown RBP10.45□□□□□ -0.74
TRIM28-210ENST00000597618 MLLT3P42568 568 aaPredicted RBP10.45□□□□□ -0.74
TRIM28-210ENST00000597618 MXI1P50539 228 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 METAP1P53582 386 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 SULT2A1Q06520 285 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 CNTN1Q12860 1018 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 NNTQ13423 1086 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 SLC12A1Q13621 1099 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 NFIL3Q16649 462 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 POM121L1PQ3SYA9 428 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 DCAF6Q58WW2 860 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 C6orf132Q5T0Z8 1188 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 XKR5Q6UX68 686 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 ATG14Q6ZNE5 492 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 GRAMD1CQ8IYS0 662 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 APCDD1Q8J025 514 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 CFAP52Q8N1V2 620 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 ARL14Q8N4G2 192 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 FBXL13Q8NEE6 735 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 IFI44Q8TCB0 444 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 SEMA4DQ92854 862 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 MYEOVQ96EZ4 313 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 IFT43Q96FT9 208 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 ATXN7L3BQ96GX2 97 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 FCRL2Q96LA5 508 aaPredicted RBP10.45□□□□□ -0.74
TRIM28-210ENST00000597618 CALN1Q9BXU9 219 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 OSBPL2Q9H1P3 480 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 RAB20Q9NX57 234 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 TLR6Q9Y2C9 796 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 U3KQA8 63 aa10.45□□□□□ -0.74
TRIM28-210ENST00000597618 UNC79Q9P2D8 2635 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 A0A1W2PNU3 283 aaPredicted RBP10.44□□□□□ -0.74
TRIM28-210ENST00000597618 CDRT15L2A8MXV6 281 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 K7ESM1 405 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 TERTO14746 1132 aaKnown RBP10.44□□□□□ -0.74
TRIM28-210ENST00000597618 ALOX15BO15296 676 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 STX10O60499 249 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 LTFP02788 710 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 CD19P15391 556 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 VAV1P15498 845 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 PRLRP16471 622 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 RPL13P26373 211 aaKnown RBP10.44□□□□□ -0.74
TRIM28-210ENST00000597618 AKT2P31751 481 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 YWHAEP62258 255 aaKnown RBP10.44□□□□□ -0.74
TRIM28-210ENST00000597618 CLN3Q13286 438 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 ZSCAN23Q3MJ62 389 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 ARL13BQ3SXY8 428 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 ERICH6BQ5W0A0 696 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 ZCCHC8Q6NZY4 707 aaKnown RBP10.44□□□□□ -0.74
TRIM28-210ENST00000597618 RBM44Q6ZP01 1051 aaKnown RBP10.44□□□□□ -0.74
TRIM28-210ENST00000597618 CLEC14AQ86T13 490 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 TPCN2Q8NHX9 752 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 UBA3Q8TBC4 463 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 FRS2Q8WU20 508 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 CCNL2Q96S94 520 aaPredicted RBP10.44□□□□□ -0.74
TRIM28-210ENST00000597618 MYOCQ99972 504 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.44□□□□□ -0.74
TRIM28-210ENST00000597618 PPM1HQ9ULR3 514 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 AHCTF1Q8WYP5 2266 aa10.44□□□□□ -0.74
TRIM28-210ENST00000597618 A0A1W2PQU0 124 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 O00370 1275 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 SLC31A1O15431 190 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 TCEA3O75764 348 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 FBXO21O94952 628 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 MOCS2O96007 188 aaPredicted RBP10.43□□□□□ -0.74
TRIM28-210ENST00000597618 APOEP02649 317 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 ITGB2P05107 769 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 VDRP11473 427 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 MYF5P13349 255 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 TGM2P21980 687 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 HNRNPA2B1P22626 353 aaKnown RBP10.43□□□□□ -0.74
TRIM28-210ENST00000597618 VASPP50552 380 aaPredicted RBP10.43□□□□□ -0.74
TRIM28-210ENST00000597618 OXCT1P55809 520 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 HNRNPKP61978 463 aaKnown RBP eCLIP10.43□□□□□ -0.74
TRIM28-210ENST00000597618 NUCB2P80303 420 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 CCDC15Q0P6D6 951 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 CUL2Q13617 745 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 COLEC12Q5KU26 742 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 RESP18Q5W5W9 173 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 NEK5Q6P3R8 708 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 ZNF574Q6ZN55 896 aaPredicted RBP10.43□□□□□ -0.74
TRIM28-210ENST00000597618 CHSY1Q86X52 802 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 LGI2Q8N0V4 545 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 SLC22A18ASQ8N1D0 253 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 EXD3Q8N9H8 876 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 OR13H1Q8NG92 308 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 WDR36Q8NI36 951 aaKnown RBP10.43□□□□□ -0.74
TRIM28-210ENST00000597618 FAM174AQ8TBP5 190 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 DQX1Q8TE96 717 aaKnown RBP10.43□□□□□ -0.74
TRIM28-210ENST00000597618 ERCC4Q92889 916 aaPredicted RBP10.43□□□□□ -0.74
TRIM28-210ENST00000597618 PAGE5Q96GU1 130 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 SLC39A13Q96H72 371 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 PRR11Q96HE9 360 aaPredicted RBP10.43□□□□□ -0.74
TRIM28-210ENST00000597618 STARD5Q9NSY2 213 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms