RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 SPRP35270 261 aaPredicted RBP15.58■□□□□ 0.09
UPF1-204ENST00000596842 POU5F1BQ06416 359 aa15.58■□□□□ 0.09
UPF1-204ENST00000596842 USP10Q14694 798 aaKnown RBP15.58■□□□□ 0.09
UPF1-204ENST00000596842 MTHFD1LQ6UB35 978 aa15.58■□□□□ 0.09
UPF1-204ENST00000596842 ARPINQ7Z6K5 226 aa15.58■□□□□ 0.09
UPF1-204ENST00000596842 ARNTL2Q8WYA1 636 aa15.58■□□□□ 0.09
UPF1-204ENST00000596842 MPP4Q96JB8 637 aa15.58■□□□□ 0.09
UPF1-204ENST00000596842 C12orf42Q96LP6 360 aa15.58■□□□□ 0.09
UPF1-204ENST00000596842 OSMRQ99650 979 aa15.58■□□□□ 0.09
UPF1-204ENST00000596842 ATXN3LQ9H3M9 355 aa15.58■□□□□ 0.09
UPF1-204ENST00000596842 GTSE1Q9NYZ3 720 aa15.58■□□□□ 0.09
UPF1-204ENST00000596842 GAS2O43903 313 aaKnown RBP15.58■□□□□ 0.08
UPF1-204ENST00000596842 CAPN15O75808 1086 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 SPATA31D3P0C874 917 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 SPATA31D4Q6ZUB0 917 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 TMCO5AQ8N6Q1 288 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 SPATA17Q96L03 361 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 PHF12Q96QT6 1004 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 NXF3Q9H4D5 531 aaKnown RBP15.58■□□□□ 0.08
UPF1-204ENST00000596842 OCEL1Q9H607 264 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 CYP4F12Q9HCS2 524 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 TIMM13Q9Y5L4 95 aaPredicted RBP15.58■□□□□ 0.08
UPF1-204ENST00000596842 CDY2AQ9Y6F7 541 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 CDY1Q9Y6F8 540 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 SCN1AP35498 2009 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 TMEM233B4DJY2 109 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 ARSAP15289 507 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 GRIA2P42262 883 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 DPYSL2Q16555 572 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 SYPL2Q5VXT5 272 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 FBXL19Q6PCT2 694 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 PIGZQ86VD9 579 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 PCDH20Q8N6Y1 951 aaKnown RBP15.58■□□□□ 0.08
UPF1-204ENST00000596842 KCNK16Q96T55 309 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 GATA5Q9BWX5 397 aaPredicted RBP15.58■□□□□ 0.08
UPF1-204ENST00000596842 SIK2Q9H0K1 926 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 NMRAL1Q9HBL8 299 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 SETD4Q9NVD3 440 aa15.58■□□□□ 0.08
UPF1-204ENST00000596842 TDRKHQ9Y2W6 561 aaKnown RBP15.58■□□□□ 0.08
UPF1-204ENST00000596842 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.57■□□□□ 0.08
UPF1-204ENST00000596842 LGALS2P05162 132 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 SRGAP2BP0DMP2 458 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 XRCC1P18887 633 aaPredicted RBP15.57■□□□□ 0.08
UPF1-204ENST00000596842 FDFT1P37268 417 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 SLC5A9Q2M3M2 681 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 C6orf52Q5T4I8 152 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 SIX6OS1Q8N1H7 587 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.57■□□□□ 0.08
UPF1-204ENST00000596842 BHLHE22Q8NFJ8 381 aaPredicted RBP15.57■□□□□ 0.08
UPF1-204ENST00000596842 EDEM1Q92611 657 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 RTP4Q96DX8 246 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 IFT43Q96FT9 208 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 NPAS2Q99743 824 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 GPAMQ9HCL2 828 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 IGKV6-21A0A0C4DH24 114 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 ADM5C9JUS6 153 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 THOP1P52888 689 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 PLK1P53350 603 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 SNX16P57768 344 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 ACAD11Q709F0 780 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 RPS27LQ71UM5 84 aaKnown RBP15.57■□□□□ 0.08
UPF1-204ENST00000596842 URGCPQ8TCY9 931 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 PLEKHG4BQ96PX9 1271 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 ILKAPQ9H0C8 392 aaPredicted RBP15.57■□□□□ 0.08
UPF1-204ENST00000596842 ANKRD12Q6UB98 2062 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 FAM72CH0Y354 149 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 FAM72AQ5TYM5 149 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 FAM72DQ6L9T8 149 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 RWDD4Q6NW29 188 aaKnown RBP15.57■□□□□ 0.08
UPF1-204ENST00000596842 LRRC8BQ6P9F7 803 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 PLPPR4Q7Z2D5 763 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 FAM72BQ86X60 149 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 APOBEC3FQ8IUX4 373 aaKnown RBP15.57■□□□□ 0.08
UPF1-204ENST00000596842 KCTD4Q8WVF5 259 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 SLC4A5Q9BY07 1137 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 CDH19Q9H159 772 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 RUVBL2Q9Y230 463 aaKnown RBP15.57■□□□□ 0.08
UPF1-204ENST00000596842 BRWD3Q6RI45 1802 aa15.57■□□□□ 0.08
UPF1-204ENST00000596842 TSPAN1O60635 241 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 TRIM13O60858 407 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 CNTFP26441 200 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 PIK3R1P27986 724 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 ADCYAP1R1P41586 468 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 NR2C2P49116 596 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 BST2Q10589 180 aaKnown RBP15.56■□□□□ 0.08
UPF1-204ENST00000596842 POU6F1Q14863 301 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 HFE2Q6ZVN8 426 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 EXOC8Q8IYI6 725 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 DCUN1D1Q96GG9 259 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 BLOC1S6Q9UL45 172 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 MCM3APO60318 1980 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 KPNA7A9QM74 516 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 JCHAINP01591 159 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 GRIA4P48058 902 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 MAP3K7CLP57077 242 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 CTBP1Q13363 440 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 RBM44Q6ZP01 1051 aaKnown RBP15.56■□□□□ 0.08
UPF1-204ENST00000596842 CXorf38Q8TB03 319 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 ACTRT2Q8TDY3 377 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 DTNBP1Q96EV8 351 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms