RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 TMEM253P0C7T8 217 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 TCF4P15884 667 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 GABRG2P18507 467 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 EPHB2P29323 1055 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 CYLC1P35663 651 aaPredicted RBP11.38□□□□□ -0.59
LIG1-211ENST00000596457 NNMTP40261 264 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 TPI1P60174 286 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 SIM2Q14190 667 aaPredicted RBP11.38□□□□□ -0.59
LIG1-211ENST00000596457 PIGHQ14442 188 aaPredicted RBP11.38□□□□□ -0.59
LIG1-211ENST00000596457 MESDQ14696 234 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 ACAP1Q15027 740 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 PTPRNQ16849 979 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 SMTNL2Q2TAL5 461 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 PPP6R3Q5H9R7 873 aaPredicted RBP11.38□□□□□ -0.59
LIG1-211ENST00000596457 C6orf118Q5T5N4 469 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 SLC35G2Q8TBE7 412 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 FNIP1Q8TF40 1166 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 PANX2Q96RD6 677 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 PPP1R9BQ96SB3 815 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 EPAS1Q99814 870 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 FEM1AQ9BSK4 669 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 OSGEPQ9NPF4 335 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 SUN2Q9UH99 717 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 SLCO3A1Q9UIG8 710 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 RAB23Q9ULC3 237 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 TBC1D30Q9Y2I9 924 aa11.38□□□□□ -0.59
LIG1-211ENST00000596457 MUC22E2RYF6 1773 aaPredicted RBP11.38□□□□□ -0.59
LIG1-211ENST00000596457 SETXQ7Z333 2677 aaKnown RBP11.37□□□□□ -0.59
LIG1-211ENST00000596457 A0A0D9SEW6 157 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 CCDC163A0A0D9SF12 145 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 SOWAHDA6NJG2 315 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 CBX4O00257 560 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 EEF2KO00418 725 aaKnown RBP11.37□□□□□ -0.59
LIG1-211ENST00000596457 MAP3K13O43283 966 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 SNAP91O60641 907 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 RPP40O75818 363 aaKnown RBP11.37□□□□□ -0.59
LIG1-211ENST00000596457 SRPRAP08240 638 aaKnown RBP11.37□□□□□ -0.59
LIG1-211ENST00000596457 RHOQP17081 205 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 NDUFV2P19404 249 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 CDC25BP30305 580 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 L1CAMP32004 1257 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 NOP2P46087 812 aaKnown RBP11.37□□□□□ -0.59
LIG1-211ENST00000596457 PLK1P53350 603 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 AIF1P55008 147 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 KRT83P78385 493 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 NRG1Q02297 640 aaPredicted RBP11.37□□□□□ -0.59
LIG1-211ENST00000596457 SULT2A1Q06520 285 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 SCAPQ12770 1279 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 SPA17Q15506 151 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 USP39Q53GS9 565 aaKnown RBP11.37□□□□□ -0.59
LIG1-211ENST00000596457 KCNT1Q5JUK3 1230 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 ZFYVE27Q5T4F4 411 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 IL31Q6EBC2 164 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 SETD3Q86TU7 594 aaPredicted RBP11.37□□□□□ -0.59
LIG1-211ENST00000596457 CPNE8Q86YQ8 564 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 TMTC1Q8IUR5 882 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 FRMD1Q8N878 549 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 MRGPRX3Q96LB0 322 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 KCTD15Q96SI1 283 aaPredicted RBP11.37□□□□□ -0.59
LIG1-211ENST00000596457 NCAPGQ9BPX3 1015 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 HINFPQ9BQA5 517 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 TMEM245Q9H330 911 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 CATSPERBQ9H7T0 1116 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 PRDM16Q9HAZ2 1276 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 ATP13A1Q9HD20 1204 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 NDFIP2Q9NV92 336 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 UVRAGQ9P2Y5 699 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 NCDNQ9UBB6 729 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 EBF1Q9UH73 591 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 TFR2Q9UP52 801 aa11.37□□□□□ -0.59
LIG1-211ENST00000596457 NYNRINQ9P2P1 1898 aaKnown RBP11.37□□□□□ -0.59
LIG1-211ENST00000596457 ILVBLA1L0T0 632 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 ACADMP11310 421 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 TNNT1P13805 278 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 SDHBP21912 280 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 GLDCP23378 1020 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 IL1R2P27930 398 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 PCK1P35558 622 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 ACVRL1P37023 503 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 GNA12Q03113 381 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 ENPP2Q13822 863 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 HADHQ16836 314 aaKnown RBP11.36□□□□□ -0.59
LIG1-211ENST00000596457 ARTNQ5T4W7 220 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 MANEALQ5VSG8 457 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 LINGO4Q6UY18 593 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 LEKR1Q6ZMV7 388 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.36□□□□□ -0.59
LIG1-211ENST00000596457 KBTBD6Q86V97 674 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 NLRP14Q86W24 1093 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 RASSF3Q86WH2 238 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 TMPRSS6Q8IU80 811 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 CCDC170Q8IYT3 715 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 FAM160A2Q8N612 972 aaPredicted RBP11.36□□□□□ -0.59
LIG1-211ENST00000596457 DEFB119Q8N690 84 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 ATP11CQ8NB49 1132 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 GAB3Q8WWW8 586 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 PRCCQ92733 491 aaPredicted RBP11.36□□□□□ -0.59
LIG1-211ENST00000596457 ALG14Q96F25 216 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 SIPA1Q96FS4 1042 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 PSMB7Q99436 277 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms