RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	SUCLA2	Q9P2R7	463 aa	Predicted RBP	5.2	□□□□□ -1.58
SS18-223	ENST00000583595	MORF4L1	Q9UBU8	362 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	KL	Q9UEF7	1012 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	UBE2J1	Q9Y385	318 aa	Predicted RBP	5.2	□□□□□ -1.58
SS18-223	ENST00000583595	SH3BP1	Q9Y3L3	701 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	EIF4G3	O43432	1585 aa	Known RBP	5.2	□□□□□ -1.58
SS18-223	ENST00000583595	PRDM2	Q13029	1718 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	ARHGEF11	O15085	1522 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	TEX13C	A0A0J9YWL9	993 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	PER2	O15055	1255 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	MFAP3L	O75121	409 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	ERN1	O75460	977 aa	Known RBP	5.19	□□□□□ -1.58
SS18-223	ENST00000583595	GPANK1	O95872	356 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	C1S	P09871	688 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	SCG2	P13521	617 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	CD19	P15391	556 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	CD72	P21854	359 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	GATA3	P23771	443 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	CALR	P27797	417 aa	Known RBP	5.19	□□□□□ -1.58
SS18-223	ENST00000583595	MTHFS	P49914	203 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	HSD17B4	P51659	736 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	RIPK4	P57078	832 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	LSM12	Q3MHD2	195 aa	Known RBP	5.19	□□□□□ -1.58
SS18-223	ENST00000583595	IGFL4	Q6B9Z1	124 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	MTFR2	Q6P444	385 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	ACSM6	Q6P461	480 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	NCEH1	Q6PIU2	408 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	MTHFD1L	Q6UB35	978 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	CHST9	Q7L1S5	443 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	CAND1	Q86VP6	1230 aa	Known RBP	5.19	□□□□□ -1.58
SS18-223	ENST00000583595	P3H2	Q8IVL5	708 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	LINC00346	Q8IVM7	164 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	ADGRG5	Q8IZF4	528 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	ADGRF2	Q8IZF7	708 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	FAM109A	Q8N4B1	249 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	MB21D1	Q8N884	522 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	MSANTD4	Q8NCY6	345 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	INTS12	Q96CB8	462 aa	Known RBP	5.19	□□□□□ -1.58
SS18-223	ENST00000583595	CDHR1	Q96JP9	859 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	PLEKHG4B	Q96PX9	1271 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	ABHD1	Q96SE0	405 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	CCDC94	Q9BW85	323 aa	Predicted RBP	5.19	□□□□□ -1.58
SS18-223	ENST00000583595	MRI	Q9BWK5	157 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	APOL6	Q9BWW8	343 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	KLHL4	Q9C0H6	718 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	PCED1A	Q9H1Q7	454 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	SLC32A1	Q9H598	525 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	RABEP2	Q9H5N1	569 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	POLR1B	Q9H9Y6	1135 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	SAP30L	Q9HAJ7	183 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	XAB2	Q9HCS7	855 aa	Known RBP	5.19	□□□□□ -1.58
SS18-223	ENST00000583595	ACAD8	Q9UKU7	415 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	VPS4A	Q9UN37	437 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	ADAM18	Q9Y3Q7	739 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	FLT1	P17948	1338 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	RIMBP3C	A6NJZ7	1639 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	RIMBP3B	A6NNM3	1639 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	RIMBP3	Q9UFD9	1639 aa		5.19	□□□□□ -1.58
SS18-223	ENST00000583595	PRAMEF33	A0A0G2JMD5	474 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	NPIPB13	A6NJU9	1138 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	NPIPB5	A8MRT5	1133 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	NPIPB4	C9JG80	1138 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	IFNL4	K9M1U5	179 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	DYNC1I1	O14576	645 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	TP73	O15350	636 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	CYP27B1	O15528	508 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	SLC7A4	O43246	635 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	TRIAP1	O43715	76 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	PRAMEF10	O60809	474 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	ZNF202	O95125	648 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	KAT7	O95251	611 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	AFP	P02771	609 aa	Known RBP	5.18	□□□□□ -1.58
SS18-223	ENST00000583595	CFI	P05156	583 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	ELANE	P08246	267 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	MCM3	P25205	808 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	MCM5	P33992	734 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	CDH8	P55286	799 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	TAS2R50	P59544	299 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	EFNB1	P98172	346 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	CEBPZ	Q03701	1054 aa	Known RBP	5.18	□□□□□ -1.58
SS18-223	ENST00000583595	KLF10	Q13118	480 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	TUBB3	Q13509	450 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	TNFAIP1	Q13829	316 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	COG2	Q14746	738 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	CRYM	Q14894	314 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	ELAVL1	Q15717	326 aa	Known RBP	5.18	□□□□□ -1.58
SS18-223	ENST00000583595	PREPL	Q4J6C6	727 aa	Predicted RBP	5.18	□□□□□ -1.58
SS18-223	ENST00000583595	ZNF667	Q5HYK9	610 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	CDC73	Q6P1J9	531 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	PLBD1	Q6P4A8	553 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	FOXR2	Q6PJQ5	311 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	CLNK	Q7Z7G1	428 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	CCDC105	Q8IYK2	499 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	TMEM116	Q8NCL8	245 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	GLG1	Q92896	1179 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	SLC22A18	Q96BI1	424 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	FAM136A	Q96C01	138 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	WDYHV1	Q96HA8	205 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	GCNA	Q96QF7	691 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	NCAPG	Q9BPX3	1015 aa		5.18	□□□□□ -1.58

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