RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 NUDT22Q9BRQ3 303 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 ISCUQ9H1K1 167 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 TASP1Q9H6P5 420 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 MAN2B2Q9Y2E5 1009 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 KNSTRNQ9Y448 316 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 LAS1LQ9Y4W2 734 aaKnown RBP4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 DIP2BQ9P265 1576 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 MAGI2Q86UL8 1455 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 CDC42BPBQ9Y5S2 1711 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 PLEKHH1Q9ULM0 1364 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 NINLQ9Y2I6 1382 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 CGNL1Q0VF96 1302 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 PLXNC1O60486 1568 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 SAMD9LQ8IVG5 1584 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 NEURL4Q96JN8 1562 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 CXorf65A6NEN9 183 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 FOXO6A8MYZ6 492 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 J3KTA2 159 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 PODXLO00592 558 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 ACOT8O14734 319 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 APOL1O14791 398 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 KIF3BO15066 747 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 KRT86O43790 486 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 ITGA5P08648 1049 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 PEPDP12955 493 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 IDEP14735 1019 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 PRIM2P49643 509 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 SHC2P98077 582 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 EGR4Q05215 589 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 OS9Q13438 667 aaPredicted RBP4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 KRT81Q14533 505 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 WDR43Q15061 677 aaKnown RBP eCLIP4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 TTC39AQ5SRH9 613 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 PARM1Q6UWI2 310 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 Q6ZTK2 550 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 CYB5R4Q7L1T6 521 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 ADGRF3Q8IZF5 1079 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 PAQR4Q8N4S7 273 aaPredicted RBP4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 ZBTB8BQ8NAP8 495 aaPredicted RBP4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 GLIS1Q8NBF1 620 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 ELP5Q8TE02 316 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 FRAT1Q92837 279 aaPredicted RBP4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 RPS6KC1Q96S38 1066 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.54□□□□□ -1.683e-8■■■□□ 14.9
SMCHD1-208ENST00000583344 MAGEH1Q9H213 219 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 DDX21Q9NR30 783 aaKnown RBP eCLIP4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 RGL1Q9NZL6 768 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 UBE2J1Q9Y385 318 aaPredicted RBP4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 PCDHB7Q9Y5E2 793 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 DUOX2Q9NRD8 1548 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 TRIP12Q14669 1992 aaPredicted RBP4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 TCF20Q9UGU0 1960 aaKnown RBP4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 PTPRTO14522 1441 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 PREX2Q70Z35 1606 aa4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 RNF17Q9BXT8 1623 aaKnown RBP4.54□□□□□ -1.68
SMCHD1-208ENST00000583344 MAPK8IP3Q9UPT6 1336 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 ASXL1Q8IXJ9 1541 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 ABCC2Q92887 1545 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 GXYLT2A0PJZ3 443 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 FAM234BA2RU67 622 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 CREB3O43889 395 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 TAF5LO75529 589 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 CPA1P15085 419 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 NSUN2Q08J23 767 aaKnown RBP eCLIP4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 NADSYN1Q6IA69 706 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 TMED8Q6PL24 325 aaPredicted RBP4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 PRR26Q8N8Z3 221 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 EXD3Q8N9H8 876 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 SRFBP1Q8NEF9 429 aaKnown RBP4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 MCRS1Q96EZ8 462 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 ZNF419Q96HQ0 510 aaPredicted RBP4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 GDF15Q99988 308 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 IL21RQ9HBE5 538 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 KCNK9Q9NPC2 374 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 CD93Q9NPY3 652 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 HIF1ANQ9NWT6 349 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 PLK2Q9NYY3 685 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 TBC1D14Q9P2M4 693 aa4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 NKTRP30414 1462 aaKnown RBP4.53□□□□□ -1.68
SMCHD1-208ENST00000583344 SYNMO15061 1565 aa4.53□□□□□ -1.69
SMCHD1-208ENST00000583344 POLR3AO14802 1390 aaPredicted RBP4.53□□□□□ -1.69
SMCHD1-208ENST00000583344 KIAA1210Q9ULL0 1709 aa4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 IQGAP1P46940 1657 aa4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 SCAF11Q99590 1463 aaKnown RBP4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 A0A1B0GVT2 93 aa4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 BECN2A8MW95 431 aa4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 INAFM1C9JVW0 142 aa4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 M0QYT0 321 aa4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 CAND2O75155 1236 aa4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 FRAT2O75474 233 aaPredicted RBP4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 IGHDP01880 384 aa4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 KRT18P05783 430 aaKnown RBP4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 SLC5A1P13866 664 aa4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 GNALP38405 381 aa4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 DSCR9P59020 149 aa4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 HDAC1Q13547 482 aaPredicted RBP4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 PMS2P11Q13670 270 aa4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 CSHL1Q14406 222 aa4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 BECN1Q14457 450 aa4.52□□□□□ -1.69
SMCHD1-208ENST00000583344 MAPKAPK3Q16644 382 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms