RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 VASPP50552 380 aaPredicted RBP21.07■□□□□ 0.96
SHMT1-209ENST00000582653 OXCT1P55809 520 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 ERICH1Q86X53 443 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 XYLT1Q86Y38 959 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 OR2T34Q8NGX1 318 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 C18orf8Q96DM3 657 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 ALG14Q96F25 216 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 STK33Q9BYT3 514 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 WDCPQ9H6R7 721 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 EBF2Q9HAK2 575 aa21.07■□□□□ 0.96
SHMT1-209ENST00000582653 F8VZ95 297 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 VILLO15195 856 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 PCDHGA12O60330 932 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 GOT1P17174 413 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 PSMD8P48556 350 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 CXCR3P49682 368 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 KRT31Q15323 416 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 KCNT1Q5JUK3 1230 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 FAM102AQ5T9C2 384 aaPredicted RBP21.06■□□□□ 0.96
SHMT1-209ENST00000582653 CDKAL1Q5VV42 579 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 NCEH1Q6PIU2 408 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 LAYNQ6UX15 382 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 CCNI2Q6ZMN8 369 aaPredicted RBP21.06■□□□□ 0.96
SHMT1-209ENST00000582653 SND1Q7KZF4 910 aaKnown RBP eCLIP21.06■□□□□ 0.96
SHMT1-209ENST00000582653 ADAT2Q7Z6V5 191 aaKnown RBP21.06■□□□□ 0.96
SHMT1-209ENST00000582653 CPA5Q8WXQ8 436 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 SKA1Q96BD8 255 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 TBCBQ99426 244 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 TKTL2Q9H0I9 626 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 GANQ9H2C0 597 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 TMPRSS4Q9NRS4 437 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 FANCLQ9NW38 375 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 TOR4AQ9NXH8 423 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 ZZEF1O43149 2961 aa21.06■□□□□ 0.96
SHMT1-209ENST00000582653 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.05■□□□□ 0.96
SHMT1-209ENST00000582653 GOLGA8SH3BPF8 625 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 CNTN5O94779 1100 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 GFPT2O94808 682 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 DKK1O94907 266 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 ADH1BP00325 375 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 CCR5P51681 352 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 DEUP1Q05D60 604 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 ZNF177Q13360 481 aaPredicted RBP21.05■□□□□ 0.96
SHMT1-209ENST00000582653 ELAVL3Q14576 367 aaKnown RBP21.05■□□□□ 0.96
SHMT1-209ENST00000582653 TRNP1Q6NT89 227 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 RBM43Q6ZSC3 357 aaKnown RBP21.05■□□□□ 0.96
SHMT1-209ENST00000582653 AADATQ8N5Z0 425 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 EPS8L1Q8TE68 723 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 SLC20A1Q8WUM9 679 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 NT5C3BQ969T7 300 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 FEM1AQ9BSK4 669 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 ACE2Q9BYF1 805 aaPredicted RBP21.05■□□□□ 0.96
SHMT1-209ENST00000582653 ARHGEF38Q9NXL2 777 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 RRN3Q9NYV6 651 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 TPX2Q9ULW0 747 aaKnown RBP21.05■□□□□ 0.96
SHMT1-209ENST00000582653 STAP1Q9ULZ2 295 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 CHD6Q8TD26 2715 aa21.05■□□□□ 0.96
SHMT1-209ENST00000582653 H0Y8X5 98 aa21.04■□□□□ 0.96
SHMT1-209ENST00000582653 TAF4O00268 1085 aa21.04■□□□□ 0.96
SHMT1-209ENST00000582653 EPHB6O15197 1021 aa21.04■□□□□ 0.96
SHMT1-209ENST00000582653 IL1BP01584 269 aa21.04■□□□□ 0.96
SHMT1-209ENST00000582653 ATXN1LP0C7T5 689 aaKnown RBP21.04■□□□□ 0.96
SHMT1-209ENST00000582653 FLT3P36888 993 aa21.04■□□□□ 0.96
SHMT1-209ENST00000582653 GRK6P43250 576 aa21.04■□□□□ 0.96
SHMT1-209ENST00000582653 C21orf59P57076 290 aa21.04■□□□□ 0.96
SHMT1-209ENST00000582653 C5orf22Q49AR2 442 aa21.04■□□□□ 0.96
SHMT1-209ENST00000582653 NAA35Q5VZE5 725 aa21.04■□□□□ 0.96
SHMT1-209ENST00000582653 FRS2Q8WU20 508 aa21.04■□□□□ 0.96
SHMT1-209ENST00000582653 FAM207AQ9NSI2 230 aaPredicted RBP21.04■□□□□ 0.96
SHMT1-209ENST00000582653 BTBD3Q9Y2F9 522 aa21.04■□□□□ 0.96
SHMT1-209ENST00000582653 OR51B4Q9Y5P0 310 aa21.04■□□□□ 0.96
SHMT1-209ENST00000582653 TNFSF14O43557 240 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 ZNF18P17022 549 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 CCT8P50990 548 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 METAP1P53582 386 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 POLR2FP61218 127 aaKnown RBP21.03■□□□□ 0.96
SHMT1-209ENST00000582653 NOMO3P69849 1222 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 SLC25A52Q3SY17 297 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 ACCSLQ4AC99 568 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 ALFQ53S48 1182 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 BRMS1LQ5PSV4 323 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 LRSAM1Q6UWE0 723 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 TMPRSS7Q7RTY8 843 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 PHLDB2Q86SQ0 1253 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 ZNF683Q8IZ20 524 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 OR14C36Q8NHC7 312 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 PGAP3Q96FM1 320 aaPredicted RBP21.03■□□□□ 0.96
SHMT1-209ENST00000582653 SLC6A18Q96N87 628 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 SPAG5Q96R06 1193 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 NLRC4Q9NPP4 1024 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 TMEM59LQ9UK28 342 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 NOCTQ9UK39 431 aaKnown RBP21.03■□□□□ 0.96
SHMT1-209ENST00000582653 VPS28Q9UK41 221 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 TBC1D30Q9Y2I9 924 aa21.03■□□□□ 0.96
SHMT1-209ENST00000582653 DMXL2Q8TDJ6 3036 aa21.02■□□□□ 0.96
SHMT1-209ENST00000582653 A0A1B0GTQ1 180 aa21.02■□□□□ 0.96
SHMT1-209ENST00000582653 PLK4O00444 970 aa21.02■□□□□ 0.96
SHMT1-209ENST00000582653 ATP9BO43861 1147 aa21.02■□□□□ 0.96
SHMT1-209ENST00000582653 CLDN11O75508 207 aa21.02■□□□□ 0.96
SHMT1-209ENST00000582653 LSM8O95777 96 aaKnown RBP21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms