RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ATP2A3Q93084 1043 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 ALG14Q96F25 216 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 HMCESQ96FZ2 354 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 LGMNQ99538 433 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 KXD1Q9BQD3 176 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 TMEM121Q9BTD3 319 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 LRRC1Q9BTT6 524 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 ACE2Q9BYF1 805 aaPredicted RBP16.53■□□□□ 0.24
SS18-211ENST00000578954 SLC2A11Q9BYW1 496 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 HPS4Q9NQG7 708 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 FBXO10Q9UK96 956 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 ZNF148Q9UQR1 794 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 OR51B4Q9Y5P0 310 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 C2CD4DB7Z1M9 353 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 H0Y626 953 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 ARNTLO00327 626 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 MTSS1O43312 755 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 CACNG3O60359 315 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 GAS8O95995 478 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 TYRP14679 529 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 ARSAP15289 507 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 RBL1P28749 1068 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 PLK1P53350 603 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 GAD2Q05329 585 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 CDH18Q13634 790 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 PTK6Q13882 451 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 GAB4Q2WGN9 574 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 FSCBQ5H9T9 825 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 TEX35Q5T0J7 233 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 TRIM68Q6AZZ1 485 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 TIGD7Q6NT04 549 aaPredicted RBP16.52■□□□□ 0.24
SS18-211ENST00000578954 CCDC13Q8IYE1 715 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 PLCD3Q8N3E9 789 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 CARNMT1Q8N4J0 409 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.52■□□□□ 0.24
SS18-211ENST00000578954 MYRIPQ8NFW9 859 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 HTR3CQ8WXA8 447 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 MAML1Q92585 1016 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 NXPE3Q969Y0 559 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 CCDC114Q96M63 670 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 BBS2Q9BXC9 721 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 IPO11Q9UI26 975 aaKnown RBP16.52■□□□□ 0.24
SS18-211ENST00000578954 CLEC4EQ9ULY5 219 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 NUMBLQ9Y6R0 609 aa16.52■□□□□ 0.24
SS18-211ENST00000578954 MYOFQ9NZM1 2061 aa16.52■□□□□ 0.23
SS18-211ENST00000578954 A0A0D9SEW6 157 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 CXorf51AA0A1B0GTR3 108 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 NEDD8-MDP1E9PL57 170 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 DFFAO00273 331 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 TTI1O43156 1089 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 PEX11BO96011 259 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 ADH5P11766 374 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 ACVRL1P37023 503 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 GDF10P55107 478 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 SLC12A1Q13621 1099 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 HEATR6Q6AI08 1181 aaKnown RBP16.51■□□□□ 0.23
SS18-211ENST00000578954 ARHGAP36Q6ZRI8 547 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 KIAA0907Q7Z7F0 614 aaPredicted RBP16.51■□□□□ 0.23
SS18-211ENST00000578954 ETFBKMTQ8IXQ9 262 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 YAF2Q8IY57 180 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 CCDC33Q8N5R6 958 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 OR7D4Q8NG98 312 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 ZFYVE19Q96K21 471 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 RPP25Q9BUL9 199 aaKnown RBP16.51■□□□□ 0.23
SS18-211ENST00000578954 C10orf88Q9H8K7 445 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 ECT2Q9H8V3 914 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 PDFQ9HBH1 243 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 PCDH9Q9HC56 1237 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 PLK2Q9NYY3 685 aa16.51■□□□□ 0.23
SS18-211ENST00000578954 KIAA1522Q9P206 1035 aaPredicted RBP16.51■□□□□ 0.23
SS18-211ENST00000578954 C5orf60A6NFR6 353 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 SGK1O00141 431 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 MATN3O15232 486 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 KCNN4O15554 427 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 CTIFO43310 598 aaKnown RBP16.5■□□□□ 0.23
SS18-211ENST00000578954 KDELR3O43731 214 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 PRAMEF11O60813 436 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 CSKP41240 450 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 IFI35P80217 286 aaPredicted RBP16.5■□□□□ 0.23
SS18-211ENST00000578954 TNK2Q07912 1038 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 IL10RBQ08334 325 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 AP1B1Q10567 949 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 WASHC5Q12768 1159 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 LMAN2Q12907 356 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 GRM2Q14416 872 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 ANO4Q32M45 955 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 P3H1Q32P28 736 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 RNF219Q5W0B1 726 aaPredicted RBP16.5■□□□□ 0.23
SS18-211ENST00000578954 PTCRAQ6ISU1 281 aaPredicted RBP16.5■□□□□ 0.23
SS18-211ENST00000578954 CCDC70Q6NSX1 233 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 CCDC117Q8IWD4 279 aaPredicted RBP16.5■□□□□ 0.23
SS18-211ENST00000578954 CPA6Q8N4T0 437 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 FAM71DQ8N9W8 422 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 DCAF4L2Q8NA75 395 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 CCNYQ8ND76 341 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 CCHCR1Q8TD31 782 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 RSAD2Q8WXG1 361 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 SEC14L1Q92503 715 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 UBXN4Q92575 508 aa16.5■□□□□ 0.23
SS18-211ENST00000578954 BHMTQ93088 406 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms