RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 NEK2P51955 445 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 CSE1LP55060 971 aaKnown RBP9.77□□□□□ -0.85
CCDC40-212ENST00000574799 ARPC4P59998 168 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 ABCE1P61221 599 aaKnown RBP9.77□□□□□ -0.85
CCDC40-212ENST00000574799 C1QBPQ07021 282 aaKnown RBP9.77□□□□□ -0.85
CCDC40-212ENST00000574799 TFDP2Q14188 446 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 CYP2A13Q16696 494 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 DRICH1Q6PGQ1 229 aaPredicted RBP9.77□□□□□ -0.85
CCDC40-212ENST00000574799 RIOX2Q8IUF8 465 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 TNS4Q8IZW8 715 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 RDM1Q8NG50 284 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 LRTOMTQ8WZ04 291 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 BIRC8Q96P09 236 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 AGAP3Q96P47 875 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 FRMD8Q9BZ67 464 aaPredicted RBP9.77□□□□□ -0.85
CCDC40-212ENST00000574799 SLC8A2Q9UPR5 921 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 TBC1D30Q9Y2I9 924 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 TPP1O14773 563 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 MAFGO15525 162 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 SUPT20HL2P0C7V6 817 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 HSPA8P11142 646 aaKnown RBP9.77□□□□□ -0.85
CCDC40-212ENST00000574799 PTPN1P18031 435 aaKnown RBP9.77□□□□□ -0.85
CCDC40-212ENST00000574799 ARL2P36404 184 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 CUL2Q13617 745 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 SPIDRQ14159 915 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 EML3Q32P44 896 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 SUPT20HL1Q3ZLR7 823 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 TRMT10BQ6PF06 316 aaKnown RBP9.77□□□□□ -0.85
CCDC40-212ENST00000574799 TMEM26Q6ZUK4 368 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 SLC35B4Q969S0 331 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 ADNPQ9H2P0 1102 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 PKD2L2Q9NZM6 624 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 VPS51Q9UID3 782 aa9.77□□□□□ -0.85
CCDC40-212ENST00000574799 RGSL1A5PLK6 1076 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 VNN1O95497 513 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 AMHP03971 560 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 CSH1P0DML2 217 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 CSH2P0DML3 217 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 CRHR1P34998 444 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 IL23RQ5VWK5 629 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 SLC9A4Q6AI14 798 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 BORAQ6PGQ7 559 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 RNF19BQ6ZMZ0 732 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 SLC35B2Q8TB61 432 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 TRPC4APQ8TEL6 797 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 ZNF606Q8WXB4 792 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 CEP170P1Q96L14 293 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 ILKAPQ9H0C8 392 aaPredicted RBP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 RBM38Q9H0Z9 239 aaKnown RBP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 STN1Q9H668 368 aaKnown RBP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 NOL6Q9H6R4 1146 aaKnown RBP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 NGRNQ9NPE2 291 aaKnown RBP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 SEPT10Q9P0V9 454 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 NXF1Q9UBU9 619 aaKnown RBP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 CROTQ9UKG9 612 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 KCNH4Q9UQ05 1017 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 PRPSAP2O60256 369 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 BAIAP3O94812 1187 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 FUCA1P04066 466 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 KRT19P08727 400 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 TMEM191BP0C7N4 346 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 RAB15P59190 212 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 MRPS5P82675 430 aaKnown RBP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 CYP24A1Q07973 514 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 TEDDM1Q5T9Z0 273 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 RWDD4Q6NW29 188 aaKnown RBP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 UBR7Q8N806 425 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 NPAS2Q99743 824 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 ADARB2Q9NS39 739 aaKnown RBP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 SCHIP1Q9P0W5 487 aaPredicted RBP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 CNTN3Q9P232 1028 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 FAM32AQ9Y421 112 aaKnown RBP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 FARP1Q9Y4F1 1045 aaPredicted RBP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 ZNF839A8K0R7 811 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 CLOCKO15516 846 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 ADAM23O75077 832 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 SERPINB1P30740 379 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 GABRB2P47870 512 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 CCDC14Q49A88 953 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 NIPAL1Q6NVV3 410 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 DNERQ8NFT8 737 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 TNIP2Q8NFZ5 429 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 ZBTB45Q96K62 511 aaPredicted RBP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 SPATA17Q96L03 361 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 NIFKQ9BYG3 293 aaKnown RBP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 CCDC90BQ9GZT6 254 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 HIPK3Q9H422 1215 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.76□□□□□ -0.85
CCDC40-212ENST00000574799 DCDC2Q9UHG0 476 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 TMEM98Q9Y2Y6 226 aa9.76□□□□□ -0.85
CCDC40-212ENST00000574799 ZNF236Q9UL36 1845 aa9.75□□□□□ -0.85
CCDC40-212ENST00000574799 TIPRLO75663 272 aa9.75□□□□□ -0.85
CCDC40-212ENST00000574799 CD48P09326 243 aa9.75□□□□□ -0.85
CCDC40-212ENST00000574799 IQCF3P0C7M6 154 aa9.75□□□□□ -0.85
CCDC40-212ENST00000574799 TSHRP16473 764 aa9.75□□□□□ -0.85
CCDC40-212ENST00000574799 ZNF182P17025 639 aaPredicted RBP9.75□□□□□ -0.85
CCDC40-212ENST00000574799 CCNA2P20248 432 aa9.75□□□□□ -0.85
CCDC40-212ENST00000574799 NR4A1P22736 598 aa9.75□□□□□ -0.85
CCDC40-212ENST00000574799 CRADDP78560 199 aa9.75□□□□□ -0.85
CCDC40-212ENST00000574799 LY6KQ17RY6 165 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms