RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 TLR1Q15399 786 aa15.96■□□□□ 0.15
NUP88-207ENST00000573584 PPM1LQ5SGD2 360 aa15.96■□□□□ 0.15
NUP88-207ENST00000573584 C16orf89Q6UX73 402 aa15.96■□□□□ 0.15
NUP88-207ENST00000573584 ARPINQ7Z6K5 226 aa15.96■□□□□ 0.15
NUP88-207ENST00000573584 OTUD5Q96G74 571 aa15.96■□□□□ 0.15
NUP88-207ENST00000573584 CDRT15Q96T59 188 aa15.96■□□□□ 0.15
NUP88-207ENST00000573584 SNX25Q9H3E2 840 aa15.96■□□□□ 0.15
NUP88-207ENST00000573584 OXSMQ9NWU1 459 aa15.96■□□□□ 0.15
NUP88-207ENST00000573584 PRPF19Q9UMS4 504 aaKnown RBP15.96■□□□□ 0.15
NUP88-207ENST00000573584 CITO14578 2027 aa15.96■□□□□ 0.14
NUP88-207ENST00000573584 M0QYT0 321 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 ATP9BO43861 1147 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 H2AFYO75367 372 aaKnown RBP15.95■□□□□ 0.14
NUP88-207ENST00000573584 AP2A1O95782 977 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 MPSTP25325 297 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 PTPN3P26045 913 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 EPHA3P29320 983 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 ZNF618Q5T7W0 954 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 PIGZQ86VD9 579 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 DSELQ8IZU8 1212 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 ACVR1CQ8NER5 493 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 DCUN1D1Q96GG9 259 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 HDAC3O15379 428 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 FBXO21O94952 628 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 PGM3O95394 542 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 MPP3Q13368 585 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 LSAMPQ13449 338 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 SNAPC2Q13487 334 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 KIZQ2M2Z5 673 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 LSM12Q3MHD2 195 aaKnown RBP15.95■□□□□ 0.14
NUP88-207ENST00000573584 FBXO47Q5MNV8 452 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 CERCAMQ5T4B2 595 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 OTUD1Q5VV17 481 aaPredicted RBP15.95■□□□□ 0.14
NUP88-207ENST00000573584 SEL1L3Q68CR1 1132 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 NDNQ99608 321 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 EIF2AQ9BY44 585 aaKnown RBP15.95■□□□□ 0.14
NUP88-207ENST00000573584 C20orf96Q9NUD7 363 aaPredicted RBP15.95■□□□□ 0.14
NUP88-207ENST00000573584 A0A0G2JLL6 359 aaPredicted RBP15.95■□□□□ 0.14
NUP88-207ENST00000573584 SMIM31A0A1B0GVY4 71 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 TIMM44O43615 452 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 AP1G1O43747 822 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 HOXA11P31270 313 aaPredicted RBP15.95■□□□□ 0.14
NUP88-207ENST00000573584 RPL14P50914 215 aaKnown RBP15.95■□□□□ 0.14
NUP88-207ENST00000573584 DPYSQ14117 519 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 CNGA3Q16281 694 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 PRRT2Q7Z6L0 340 aaPredicted RBP15.95■□□□□ 0.14
NUP88-207ENST00000573584 CNDP1Q96KN2 507 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 LRGUKQ96M69 825 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 ACE2Q9BYF1 805 aaPredicted RBP15.95■□□□□ 0.14
NUP88-207ENST00000573584 GPRC5DQ9NZD1 345 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 SLC39A10Q9ULF5 831 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 RAP2CQ9Y3L5 183 aa15.95■□□□□ 0.14
NUP88-207ENST00000573584 DENRO43583 198 aaKnown RBP15.94■□□□□ 0.14
NUP88-207ENST00000573584 OR6B1O95007 311 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 NOS2P35228 1153 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 MSX2P35548 267 aaPredicted RBP15.94■□□□□ 0.14
NUP88-207ENST00000573584 TMEM62Q0P6H9 643 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 CYLC2Q14093 348 aaPredicted RBP15.94■□□□□ 0.14
NUP88-207ENST00000573584 FLOT2Q14254 428 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 KCNMB4Q86W47 210 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 MARVELD2Q8N4S9 558 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 RP9Q8TA86 221 aaKnown RBP15.94■□□□□ 0.14
NUP88-207ENST00000573584 TASP1Q9H6P5 420 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 ELP3Q9H9T3 547 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 CHRAC1Q9NRG0 131 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 IARS2Q9NSE4 1012 aaKnown RBP15.94■□□□□ 0.14
NUP88-207ENST00000573584 CLIC5Q9NZA1 410 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 GJD2Q9UKL4 321 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 MCM3APO60318 1980 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 GOLGA8TH3BQL2 631 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 DCLK1O15075 740 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 CFLARO15519 480 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 AMHP03971 560 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 SAT1P21673 171 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 TKTP29401 623 aaKnown RBP15.94■□□□□ 0.14
NUP88-207ENST00000573584 PMLP29590 882 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 CCR10P46092 362 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 GRIA4P48058 902 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 THOP1P52888 689 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 MRPS22P82650 360 aaKnown RBP15.94■□□□□ 0.14
NUP88-207ENST00000573584 ITGA7Q13683 1181 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 LAMB3Q13751 1172 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 RARS2Q5T160 578 aaKnown RBP15.94■□□□□ 0.14
NUP88-207ENST00000573584 SYPL2Q5VXT5 272 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 SLC27A1Q6PCB7 646 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 BNC2Q6ZN30 1099 aaPredicted RBP15.94■□□□□ 0.14
NUP88-207ENST00000573584 ARMCX2Q7L311 632 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 SPATA24Q86W54 205 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 VPS39Q96JC1 886 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 NPY6RQ99463 290 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 APOL2Q9BQE5 337 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 NUF2Q9BZD4 464 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 DRC3Q9H069 523 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 Q9H521 79 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 CASS4Q9NQ75 786 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 SETD4Q9NVD3 440 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 NDUFA13Q9P0J0 144 aa15.94■□□□□ 0.14
NUP88-207ENST00000573584 TK2O00142 265 aa15.93■□□□□ 0.14
NUP88-207ENST00000573584 XPO1O14980 1071 aaKnown RBP15.93■□□□□ 0.14
NUP88-207ENST00000573584 SPTLC1O15269 473 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms