RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 USP17L7P0C7H9 530 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 NCAM1P13591 858 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 TUBP50607 506 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 GALNT2Q10471 571 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 LBRQ14739 615 aaKnown RBP23.27■■□□□ 1.32
VPS53-211ENST00000571805 FAM110CQ1W6H9 321 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 TWF2Q6IBS0 349 aaKnown RBP23.27■■□□□ 1.32
VPS53-211ENST00000571805 NAPRTQ6XQN6 538 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 FAM35AQ86V20 835 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 OXCT2Q9BYC2 517 aaPredicted RBP23.27■■□□□ 1.32
VPS53-211ENST00000571805 TSPYL2Q9H2G4 693 aaPredicted RBP23.27■■□□□ 1.32
VPS53-211ENST00000571805 A0A096LPK6 155 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 MEIS3P2A8K0S8 358 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 MPOP05164 745 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 ERFP50548 548 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 ZRSR2Q15696 482 aaKnown RBP23.26■■□□□ 1.31
VPS53-211ENST00000571805 DLG2Q15700 870 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 TMCO4Q5TGY1 634 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 PDPK2PQ6A1A2 396 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 BHLHA9Q7RTU4 235 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 GSTCDQ8NEC7 633 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 PCED1BQ96HM7 432 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 COLEC11Q9BWP8 271 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 ZNF408Q9H9D4 720 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 CAB39LQ9H9S4 337 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 DDIT4Q9NX09 232 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 TRHDEQ9UKU6 1024 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 UPP2O95045 317 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 NFKB1P19838 968 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 ABCG1P45844 678 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 COPAP53621 1224 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 IRF9Q00978 393 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 RALGPS1Q5JS13 557 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 ZSCAN18Q8TBC5 510 aaPredicted RBP23.26■■□□□ 1.31
VPS53-211ENST00000571805 DPF3Q92784 378 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 ZNF184Q99676 751 aaPredicted RBP23.26■■□□□ 1.31
VPS53-211ENST00000571805 CHRAC1Q9NRG0 131 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 SNX10Q9Y5X0 201 aa23.26■■□□□ 1.31
VPS53-211ENST00000571805 SHROOM3Q8TF72 1996 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 MAGEB16A2A368 324 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 HHLA1C9JL84 531 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 MTSS1O43312 755 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 LTFP02788 710 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 NPY2RP49146 381 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 AP2B1P63010 937 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 SLC25A41Q8N5S1 370 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 ACVR1CQ8NER5 493 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 URGCPQ8TCY9 931 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.25■■□□□ 1.31
VPS53-211ENST00000571805 ATP9BO43861 1147 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 ZNF865P0CJ78 1059 aaPredicted RBP23.25■■□□□ 1.31
VPS53-211ENST00000571805 TMEM154Q6P9G4 183 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 PGM2L1Q6PCE3 622 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 EPGNQ6UW88 154 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 ZNF781Q8N8C0 355 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 APOL2Q9BQE5 337 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 FLRT1Q9NZU1 646 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 PPM1HQ9ULR3 514 aa23.25■■□□□ 1.31
VPS53-211ENST00000571805 TIMM13Q9Y5L4 95 aaPredicted RBP23.25■■□□□ 1.31
VPS53-211ENST00000571805 NEBLO76041 1014 aa23.24■■□□□ 1.31
VPS53-211ENST00000571805 C2P06681 752 aa23.24■■□□□ 1.31
VPS53-211ENST00000571805 USP4Q13107 963 aa23.24■■□□□ 1.31
VPS53-211ENST00000571805 ARL13BQ3SXY8 428 aa23.24■■□□□ 1.31
VPS53-211ENST00000571805 PAXIP1Q6ZW49 1069 aaPredicted RBP23.24■■□□□ 1.31
VPS53-211ENST00000571805 KCNMB4Q86W47 210 aa23.24■■□□□ 1.31
VPS53-211ENST00000571805 PTPN18Q99952 460 aa23.24■■□□□ 1.31
VPS53-211ENST00000571805 CDH19Q9H159 772 aa23.24■■□□□ 1.31
VPS53-211ENST00000571805 COG4Q9H9E3 785 aa23.24■■□□□ 1.31
VPS53-211ENST00000571805 DOCK3Q8IZD9 2030 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 PALM2-AKAP2B1ALY0 433 aaPredicted RBP23.23■■□□□ 1.31
VPS53-211ENST00000571805 CCNT2O60583 730 aaKnown RBP23.23■■□□□ 1.31
VPS53-211ENST00000571805 YBX3P16989 372 aaKnown RBP eCLIP23.23■■□□□ 1.31
VPS53-211ENST00000571805 TPH1P17752 444 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 LHX1P48742 406 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 CXCR3P49682 368 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 CSRP3P50461 194 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 CSE1LP55060 971 aaKnown RBP23.23■■□□□ 1.31
VPS53-211ENST00000571805 BTKQ06187 659 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 ITPRIPL1Q6GPH6 555 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 PHTF2Q8N3S3 785 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 TEKT5Q96M29 485 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 C20orf96Q9NUD7 363 aaPredicted RBP23.23■■□□□ 1.31
VPS53-211ENST00000571805 OR12D3Q9UGF7 316 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 MAGED2Q9UNF1 606 aaPredicted RBP23.23■■□□□ 1.31
VPS53-211ENST00000571805 CDY2AQ9Y6F7 541 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 CDY1Q9Y6F8 540 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 FKBP6O75344 327 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 MYL3P08590 195 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 AFF1P51825 1210 aaKnown RBP23.23■■□□□ 1.31
VPS53-211ENST00000571805 MPP3Q13368 585 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 TMEM86AQ8N2M4 240 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 EDEM1Q92611 657 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 CMTM5Q96DZ9 223 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 VAT1Q99536 393 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 IL22Q9GZX6 179 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 WDCPQ9H6R7 721 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 RRN3Q9NYV6 651 aa23.23■■□□□ 1.31
VPS53-211ENST00000571805 C17orf102A2RUQ5 167 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 ARHGAP42A6NI28 874 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 TMEM114B3SHH9 223 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms