RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ZWILCHQ9H900 591 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 PCSK1NQ9UHG2 260 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 TBC1D30Q9Y2I9 924 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 TBC1D3BA6NDS4 549 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 SRGAP2O75044 1071 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 ATG13O75143 517 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 LRIG2O94898 1065 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 CHRNB1P11230 501 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 ETFBP38117 255 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 SLC6A11P48066 632 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 NAP1L1P55209 391 aaKnown RBP21.16■□□□□ 0.98
VPS53-210ENST00000571456 MRPS21P82921 87 aaKnown RBP21.16■□□□□ 0.98
VPS53-210ENST00000571456 GAS6Q14393 721 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 HEATR6Q6AI08 1181 aaKnown RBP21.16■□□□□ 0.98
VPS53-210ENST00000571456 FSTL4Q6MZW2 842 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 PSAPL1Q6NUJ1 521 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 TRMT11Q7Z4G4 463 aaKnown RBP21.16■□□□□ 0.98
VPS53-210ENST00000571456 VSIG1Q86XK7 387 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 MAP7D3Q8IWC1 876 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 CARNMT1Q8N4J0 409 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 DESI2Q9BSY9 194 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 ARRDC1-AS1Q9H2J1 176 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 DHX35Q9H5Z1 703 aaKnown RBP21.16■□□□□ 0.98
VPS53-210ENST00000571456 ITPR1Q14643 2758 aa21.16■□□□□ 0.98
VPS53-210ENST00000571456 CXorf51AA0A1B0GTR3 108 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 SRRM3A6NNA2 597 aaPredicted RBP21.15■□□□□ 0.98
VPS53-210ENST00000571456 AXIN1O15169 862 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 PAPSS2O95340 614 aaPredicted RBP21.15■□□□□ 0.98
VPS53-210ENST00000571456 PABPC1P11940 636 aaKnown RBP21.15■□□□□ 0.98
VPS53-210ENST00000571456 ARL4AP40617 200 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 SSR1P43307 286 aaKnown RBP21.15■□□□□ 0.98
VPS53-210ENST00000571456 SGSHP51688 502 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 PLK1P53350 603 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 PDK2Q15119 407 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 CYP4V2Q6ZWL3 525 aaPredicted RBP21.15■□□□□ 0.98
VPS53-210ENST00000571456 C14orf80Q86SX3 495 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 RHOT1Q8IXI2 618 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 CFAP52Q8N1V2 620 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 TPCN2Q8NHX9 752 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 PEBP4Q96S96 227 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 LACRTQ9GZZ8 138 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 TMPRSS4Q9NRS4 437 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 TMEM248Q9NWD8 314 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 GGA2Q9UJY4 613 aa21.15■□□□□ 0.98
VPS53-210ENST00000571456 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.15■□□□□ 0.98
VPS53-210ENST00000571456 RCCD1A6NED2 376 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 WASH4PA8MWX3 477 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 ZNF487B1APH4 448 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 H3BRJ5 948 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 K7ESF4 209 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 PSTPIP1O43586 416 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 SPOPO43791 374 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 BUB1BO60566 1050 aaPredicted RBP21.14■□□□□ 0.97
VPS53-210ENST00000571456 ASLP04424 464 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 RARAP10276 462 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 EPHB2P29323 1055 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 TPI1P60174 286 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 SULT2A1Q06520 285 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 CCDC6Q16204 474 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 RWDD4Q6NW29 188 aaKnown RBP21.14■□□□□ 0.97
VPS53-210ENST00000571456 DAAM2Q86T65 1068 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 FAM71BQ8TC56 605 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 PRDM16Q9HAZ2 1276 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 DDX56Q9NY93 547 aaKnown RBP21.14■□□□□ 0.97
VPS53-210ENST00000571456 LHX6Q9UPM6 363 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 MYO18AQ92614 2054 aaKnown RBP21.14■□□□□ 0.97
VPS53-210ENST00000571456 CHD5Q8TDI0 1954 aa21.14■□□□□ 0.97
VPS53-210ENST00000571456 ILVBLA1L0T0 632 aa21.13■□□□□ 0.97
VPS53-210ENST00000571456 EEF2KO00418 725 aaKnown RBP21.13■□□□□ 0.97
VPS53-210ENST00000571456 ATP5BP06576 529 aaKnown RBP21.13■□□□□ 0.97
VPS53-210ENST00000571456 IL1R2P27930 398 aa21.13■□□□□ 0.97
VPS53-210ENST00000571456 HLA-FP30511 346 aa21.13■□□□□ 0.97
VPS53-210ENST00000571456 OR1E1P30953 314 aa21.13■□□□□ 0.97
VPS53-210ENST00000571456 KDSRQ06136 332 aa21.13■□□□□ 0.97
VPS53-210ENST00000571456 RTL3Q8N8U3 475 aaKnown RBP21.13■□□□□ 0.97
VPS53-210ENST00000571456 KIAA1524Q8TCG1 905 aa21.13■□□□□ 0.97
VPS53-210ENST00000571456 ACDQ96AP0 544 aa21.13■□□□□ 0.97
VPS53-210ENST00000571456 MYEOVQ96EZ4 313 aa21.13■□□□□ 0.97
VPS53-210ENST00000571456 LOXL4Q96JB6 756 aa21.13■□□□□ 0.97
VPS53-210ENST00000571456 TMEM121BQ9BXQ6 578 aaPredicted RBP21.13■□□□□ 0.97
VPS53-210ENST00000571456 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.13■□□□□ 0.97
VPS53-210ENST00000571456 ABCB8Q9NUT2 735 aa21.13■□□□□ 0.97
VPS53-210ENST00000571456 ALG6Q9Y672 507 aa21.13■□□□□ 0.97
VPS53-210ENST00000571456 TMEM110-MUSTN1A8MSY1 372 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 FAM72CH0Y354 149 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 K7EQS6 105 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 ZSCAN12O43309 604 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 CREB3O43889 395 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 EGFP01133 1207 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 RHOCP08134 193 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 POLR2EP19388 210 aaKnown RBP21.12■□□□□ 0.97
VPS53-210ENST00000571456 COMTP21964 271 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 GGCXP38435 758 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 ODF2Q5BJF6 829 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 PPP6R3Q5H9R7 873 aaPredicted RBP21.12■□□□□ 0.97
VPS53-210ENST00000571456 FAM72AQ5TYM5 149 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 FAM72DQ6L9T8 149 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 CXorf57Q6NSI4 855 aaKnown RBP21.12■□□□□ 0.97
VPS53-210ENST00000571456 NLRP14Q86W24 1093 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 FAM72BQ86X60 149 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms