RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 CXCL12P48061 93 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 GEMIN4P57678 1058 aaKnown RBP12.48□□□□□ -0.41
SF3B3-208ENST00000567250 TAS2R40P59535 323 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 ECT2LQ008S8 904 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 ZNF234Q14588 700 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 PARP15Q460N3 678 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 IL31Q6EBC2 164 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 RETSATQ6NUM9 610 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 ZNF662Q6ZS27 426 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 RNF10Q8N5U6 811 aaKnown RBP12.48□□□□□ -0.41
SF3B3-208ENST00000567250 LZTR1Q8N653 840 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 KIAA1524Q8TCG1 905 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 UBE2Q2Q8WVN8 375 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 ALS2CR12Q96Q35 445 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 FEM1AQ9BSK4 669 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 CALN1Q9BXU9 219 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 LACRTQ9GZZ8 138 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 ATP13A1Q9HD20 1204 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 CWC15Q9P013 229 aaKnown RBP12.48□□□□□ -0.41
SF3B3-208ENST00000567250 DNAI1Q9UI46 699 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 FBXO4Q9UKT5 387 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 INTS6Q9UL03 887 aaKnown RBP12.48□□□□□ -0.41
SF3B3-208ENST00000567250 HPCAL4Q9UM19 191 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 ALG6Q9Y672 507 aa12.48□□□□□ -0.41
SF3B3-208ENST00000567250 MYO18AQ92614 2054 aaKnown RBP12.48□□□□□ -0.41
SF3B3-208ENST00000567250 LRRD1A4D1F6 860 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 ZSCAN5CA6NGD5 496 aaPredicted RBP12.47□□□□□ -0.41
SF3B3-208ENST00000567250 ZNF487B1APH4 448 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 KRT1P04264 644 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 ERCC2P18074 760 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 DGKEP52429 567 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 NDST2P52849 883 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 ENPP2Q13822 863 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 DPYSQ14117 519 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 GAS6Q14393 721 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 POLD3Q15054 466 aaPredicted RBP12.47□□□□□ -0.41
SF3B3-208ENST00000567250 ANGPT1Q15389 498 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 CRY1Q16526 586 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 TMEM215Q68D42 235 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 TXNRD3NBQ6F5E7 133 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 PKN3Q6P5Z2 889 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 TMCO3Q6UWJ1 677 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 METTL3Q86U44 580 aaKnown RBP12.47□□□□□ -0.41
SF3B3-208ENST00000567250 ZNF354CQ86Y25 554 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 APCDD1Q8J025 514 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 UMODL1-AS1Q8N2C9 162 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 CCDC33Q8N5R6 958 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 CAMKK1Q8N5S9 505 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 TSTD1Q8NFU3 115 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 FAM71BQ8TC56 605 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.47□□□□□ -0.41
SF3B3-208ENST00000567250 CYB5D2Q8WUJ1 264 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 CSPG4P5Q96PW8 444 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 GABRG3Q99928 467 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 FAM126AQ9BYI3 521 aaPredicted RBP12.47□□□□□ -0.41
SF3B3-208ENST00000567250 MAGEB5Q9BZ81 275 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 IRF2BPLQ9H1B7 796 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 FBRSQ9HAH7 460 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 CACNA2D2Q9NY47 1150 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 ERVW-1Q9UQF0 538 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 STON1Q9Y6Q2 735 aa12.47□□□□□ -0.41
SF3B3-208ENST00000567250 A0A0D9SEW6 157 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 CCDC66A2RUB6 948 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 ARHGAP42A6NI28 874 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 SGK1O00141 431 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 CBX4O00257 560 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 ZSCAN12O43309 604 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 SYNCRIPO60506 623 aaKnown RBP12.46□□□□□ -0.41
SF3B3-208ENST00000567250 APBB3O95704 486 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 EPHX1P07099 455 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 IL12RB1P42701 662 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 CLCN6P51797 869 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 NRLP54845 237 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 SATB1Q01826 763 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 DPYSL3Q14195 570 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 PTPRNQ16849 979 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 ARTNQ5T4W7 220 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 EMC10Q5UCC4 262 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 PEX26Q7Z412 305 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 OR52K2Q8NGK3 314 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 SORCS1Q8WY21 1168 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 ARHGEF2Q92974 986 aaKnown RBP12.46□□□□□ -0.41
SF3B3-208ENST00000567250 ALG14Q96F25 216 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 RBM41Q96IZ5 413 aaKnown RBP12.46□□□□□ -0.41
SF3B3-208ENST00000567250 CCDC114Q96M63 670 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 SPON2Q9BUD6 331 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 PRDM16Q9HAZ2 1276 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 KLHL11Q9NVR0 708 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 SUN2Q9UH99 717 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 VPS51Q9UID3 782 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 SALL4Q9UJQ4 1053 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 AMFRQ9UKV5 643 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 GUCA1BQ9UMX6 200 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 PPP2R2CQ9Y2T4 447 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 OR51B4Q9Y5P0 310 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 DUSP10Q9Y6W6 482 aa12.46□□□□□ -0.41
SF3B3-208ENST00000567250 PLXND1Q9Y4D7 1925 aa12.45□□□□□ -0.42
SF3B3-208ENST00000567250 GRID2IPA4D2P6 1211 aa12.45□□□□□ -0.42
SF3B3-208ENST00000567250 MIF4GDA9UHW6 222 aaKnown RBP12.45□□□□□ -0.42
SF3B3-208ENST00000567250 RASA4BC9J798 803 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms