RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 LCMT1Q9UIC8 334 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 GGA2Q9UJY4 613 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 INTUQ9ULD6 942 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 SLC27A6Q9Y2P4 619 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 EPN1Q9Y6I3 576 aaPredicted RBP17.75■□□□□ 0.43
CLN3-217ENST00000565354 LAMA5O15230 3695 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 EIF3CLB5ME19 914 aaKnown RBP17.74■□□□□ 0.43
CLN3-217ENST00000565354 CLDN11O75508 207 aa17.74■□□□□ 0.43
CLN3-217ENST00000565354 NDUFA10O95299 355 aa17.74■□□□□ 0.43
CLN3-217ENST00000565354 PABPC1P11940 636 aaKnown RBP17.74■□□□□ 0.43
CLN3-217ENST00000565354 BCKDHBP21953 392 aa17.74■□□□□ 0.43
CLN3-217ENST00000565354 OXCT1P55809 520 aa17.74■□□□□ 0.43
CLN3-217ENST00000565354 GEN1Q17RS7 908 aa17.74■□□□□ 0.43
CLN3-217ENST00000565354 UAP1L1Q3KQV9 507 aa17.74■□□□□ 0.43
CLN3-217ENST00000565354 SDE2Q6IQ49 451 aa17.74■□□□□ 0.43
CLN3-217ENST00000565354 RWDD4Q6NW29 188 aaKnown RBP17.74■□□□□ 0.43
CLN3-217ENST00000565354 CHST9Q7L1S5 443 aa17.74■□□□□ 0.43
CLN3-217ENST00000565354 RASSF3Q86WH2 238 aa17.74■□□□□ 0.43
CLN3-217ENST00000565354 SFTPA1Q8IWL2 248 aa17.74■□□□□ 0.43
CLN3-217ENST00000565354 AHI1Q8N157 1196 aa17.74■□□□□ 0.43
CLN3-217ENST00000565354 ZNF513Q8N8E2 541 aaPredicted RBP17.74■□□□□ 0.43
CLN3-217ENST00000565354 EIF3CQ99613 913 aaKnown RBP17.74■□□□□ 0.43
CLN3-217ENST00000565354 OSBPL2Q9H1P3 480 aa17.74■□□□□ 0.43
CLN3-217ENST00000565354 KIAA1522Q9P206 1035 aaPredicted RBP17.74■□□□□ 0.43
CLN3-217ENST00000565354 FZD10Q9ULW2 581 aa17.74■□□□□ 0.43
CLN3-217ENST00000565354 PCDHA13Q9Y5I0 950 aa17.74■□□□□ 0.43
CLN3-217ENST00000565354 A0A0A0MRY4 1105 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 TMEM110-MUSTN1A8MSY1 372 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 I6L893 689 aaPredicted RBP17.73■□□□□ 0.43
CLN3-217ENST00000565354 NRDCO43847 1150 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 POLR2EP19388 210 aaKnown RBP17.73■□□□□ 0.43
CLN3-217ENST00000565354 FECHP22830 423 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 MIPP30301 263 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 HLA-FP30511 346 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 CD70P32970 193 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 CDH4P55283 916 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 SCAPQ12770 1279 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 LMAN2Q12907 356 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 EIF4HQ15056 248 aaKnown RBP17.73■□□□□ 0.43
CLN3-217ENST00000565354 SLC35G2Q8TBE7 412 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 WFDC5Q8TCV5 224 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 USP33Q8TEY7 942 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 RFFLQ8WZ73 363 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 TBC1D31Q96DN5 1066 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 PPP1R9BQ96SB3 815 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 EPAS1Q99814 870 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 ZYG11BQ9C0D3 744 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 EVLQ9UI08 416 aaPredicted RBP17.73■□□□□ 0.43
CLN3-217ENST00000565354 LHX6Q9UPM6 363 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 AP4E1Q9UPM8 1137 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 NEUROG3Q9Y4Z2 214 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 FREM2Q5SZK8 3169 aa17.73■□□□□ 0.43
CLN3-217ENST00000565354 PLXND1Q9Y4D7 1925 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 PRRT4C9JH25 899 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 TIMM44O43615 452 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 CREB3O43889 395 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 LRCH4O75427 683 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 LCA5LO95447 670 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 KLF8O95600 359 aaPredicted RBP17.72■□□□□ 0.43
CLN3-217ENST00000565354 RHOCP08134 193 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 PCK1P35558 622 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 NOP2P46087 812 aaKnown RBP17.72■□□□□ 0.43
CLN3-217ENST00000565354 DHPSP49366 369 aaPredicted RBP17.72■□□□□ 0.43
CLN3-217ENST00000565354 NRG1Q02297 640 aaPredicted RBP17.72■□□□□ 0.43
CLN3-217ENST00000565354 MESDQ14696 234 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 HADHQ16836 314 aaKnown RBP17.72■□□□□ 0.43
CLN3-217ENST00000565354 HSF5Q4G112 596 aaPredicted RBP17.72■□□□□ 0.43
CLN3-217ENST00000565354 EOGTQ5NDL2 527 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 ERMARDQ5T6L9 678 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 EMC10Q5UCC4 262 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 ANO7Q6IWH7 933 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 KIAA1211LQ6NV74 962 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 KIAA1328Q86T90 577 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 CCDC33Q8N5R6 958 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 ALLCQ8N6M5 410 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.72■□□□□ 0.43
CLN3-217ENST00000565354 NIPA2Q8N8Q9 360 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 KCNV2Q8TDN2 545 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 PIGKQ92643 395 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 SNRNP25Q9BV90 132 aaKnown RBP17.72■□□□□ 0.43
CLN3-217ENST00000565354 DHX35Q9H5Z1 703 aaKnown RBP17.72■□□□□ 0.43
CLN3-217ENST00000565354 OSGEPQ9NPF4 335 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 GPATCH2LQ9NWQ4 482 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 ELOVL2Q9NXB9 296 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 MPP6Q9NZW5 540 aa17.72■□□□□ 0.43
CLN3-217ENST00000565354 PPARGC1AQ9UBK2 798 aaKnown RBP17.72■□□□□ 0.43
CLN3-217ENST00000565354 DRGXA6NNA5 263 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 HYAL3O43820 417 aaPredicted RBP17.71■□□□□ 0.43
CLN3-217ENST00000565354 CNTN5O94779 1100 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 ATP5BP06576 529 aaKnown RBP17.71■□□□□ 0.43
CLN3-217ENST00000565354 KIR2DL1P43626 348 aaPredicted RBP17.71■□□□□ 0.43
CLN3-217ENST00000565354 IRAK1P51617 712 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 KRT83P78385 493 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 SLC12A1Q13621 1099 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 C5orf22Q49AR2 442 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 ALFQ53S48 1182 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 C6orf118Q5T5N4 469 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 EGFLAMQ63HQ2 1017 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 MBLAC2Q68D91 279 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 RAD9BQ6WBX8 426 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms