RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ELAVL3Q14576 367 aaKnown RBP15.29■□□□□ 0.04
CLN3-213ENST00000565047 CCDC14Q49A88 953 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 STK40Q8N2I9 435 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 EMC1Q8N766 993 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 SLC30A5Q8TAD4 765 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 CENPIQ92674 756 aaPredicted RBP15.29■□□□□ 0.04
CLN3-213ENST00000565047 HAPLN3Q96S86 360 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 MIR1-1HGQ9H1L0 117 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 IL21RQ9HBE5 538 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 FBXL12Q9NXK8 326 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 ANGPTL2Q9UKU9 493 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 ACACBO00763 2458 aa15.29■□□□□ 0.04
CLN3-213ENST00000565047 A0A1W2PP55 124 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 C2CD4BA6NLJ0 364 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 GOLGA8SH3BPF8 625 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 CBFA2T3O75081 653 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 TOP3BO95985 862 aaKnown RBP15.28■□□□□ 0.04
CLN3-213ENST00000565047 MT-CO1P00395 513 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 CD27P26842 260 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 RDXP35241 583 aaKnown RBP15.28■□□□□ 0.04
CLN3-213ENST00000565047 ATXN3P54252 364 aaPredicted RBP15.28■□□□□ 0.04
CLN3-213ENST00000565047 ZNF252P-AS1Q0IIN9 211 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 TTC31Q49AM3 519 aaPredicted RBP15.28■□□□□ 0.04
CLN3-213ENST00000565047 ACBD5Q5T8D3 534 aaPredicted RBP15.28■□□□□ 0.04
CLN3-213ENST00000565047 RNF219Q5W0B1 726 aaPredicted RBP15.28■□□□□ 0.04
CLN3-213ENST00000565047 SH2D3CQ8N5H7 860 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 JOSD2Q8TAC2 188 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 SYT11Q9BT88 431 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 TM9SF3Q9HD45 589 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 SARDHQ9UL12 918 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 PPM1HQ9ULR3 514 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 FZD4Q9ULV1 537 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 NEU3Q9UQ49 428 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 HS3ST2Q9Y278 367 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 NYNRINQ9P2P1 1898 aaKnown RBP15.28■□□□□ 0.04
CLN3-213ENST00000565047 FRYQ5TBA9 3013 aa15.28■□□□□ 0.04
CLN3-213ENST00000565047 TPRP12270 2363 aaKnown RBP15.28■□□□□ 0.04
CLN3-213ENST00000565047 CHD8Q9HCK8 2581 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 A0A0D9SEW6 157 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 E9PAM4 449 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 GOLGA6L22H0YM25 854 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 SH3BP5O60239 455 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 RNASEH1O60930 286 aaKnown RBP15.27■□□□□ 0.04
CLN3-213ENST00000565047 GJB6O95452 261 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 ZNF883P0CG24 379 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 C5AR1P21730 350 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 CSNK1EP49674 416 aaKnown RBP15.27■□□□□ 0.04
CLN3-213ENST00000565047 NRG1Q02297 640 aaPredicted RBP15.27■□□□□ 0.04
CLN3-213ENST00000565047 UBXN1Q04323 297 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 KCNT1Q5JUK3 1230 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 MANEALQ5VSG8 457 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 KIAA0895LQ68EN5 471 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 NCEH1Q6PIU2 408 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 TRIM72Q6ZMU5 477 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 SETD3Q86TU7 594 aaPredicted RBP15.27■□□□□ 0.04
CLN3-213ENST00000565047 FAM131BQ86XD5 332 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 PHF13Q86YI8 300 aaPredicted RBP15.27■□□□□ 0.04
CLN3-213ENST00000565047 HDDC3Q8N4P3 179 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 RXFP2Q8WXD0 754 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 CAMK1GQ96NX5 476 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 SPAG5Q96R06 1193 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 BPIFA3Q9BQP9 254 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 FUCA2Q9BTY2 467 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 TMEM121BQ9BXQ6 578 aaPredicted RBP15.27■□□□□ 0.04
CLN3-213ENST00000565047 METTL5Q9NRN9 209 aaKnown RBP15.27■□□□□ 0.04
CLN3-213ENST00000565047 MPP6Q9NZW5 540 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 NCKAP1Q9Y2A7 1128 aa15.27■□□□□ 0.04
CLN3-213ENST00000565047 KMT2BQ9UMN6 2715 aaPredicted RBP15.27■□□□□ 0.03
CLN3-213ENST00000565047 SPAARA0A1B0GVQ0 90 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 A0A1B0GVT2 93 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 K7ERQ8 282 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 RNF103O00237 685 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 WNT9AO14904 365 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 MCF2LO15068 1137 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 TEX33O43247 280 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 SNAP91O60641 907 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 ZNF821O75541 412 aaPredicted RBP15.26■□□□□ 0.03
CLN3-213ENST00000565047 RNASEH2AO75792 299 aaKnown RBP15.26■□□□□ 0.03
CLN3-213ENST00000565047 ZMPSTE24O75844 475 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 ADH1BP00325 375 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 TPM2P07951 284 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 SRCP12931 536 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 GOT1P17174 413 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 GRIA4P48058 902 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 AFF3P51826 1226 aaKnown RBP15.26■□□□□ 0.03
CLN3-213ENST00000565047 ADPRHP54922 357 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 HDAC4P56524 1084 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 DLG2Q15700 870 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 CLEC16AQ2KHT3 1053 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 C15orf59Q2T9L4 293 aaPredicted RBP15.26■□□□□ 0.03
CLN3-213ENST00000565047 KIF19Q2TAC6 998 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 HLA-BQ31612 363 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 SND1Q7KZF4 910 aaKnown RBP eCLIP15.26■□□□□ 0.032e-7■■■□□ 14.9
CLN3-213ENST00000565047 MON1BQ7L1V2 547 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 IRF2BP2Q7Z5L9 587 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 PHLDB2Q86SQ0 1253 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 AOPEPQ8N6M6 819 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 MSANTD4Q8NCY6 345 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 NEK11Q8NG66 645 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 OR2T34Q8NGX1 318 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms