RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 CD6P30203 668 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 OR1E1P30953 314 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 HDAC4P56524 1084 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 RPL7AP62424 266 aaKnown RBP13.76□□□□□ -0.21
CLK3-216ENST00000564468 MAMLD1Q13495 774 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 TSR1Q2NL82 804 aaKnown RBP13.76□□□□□ -0.21
CLK3-216ENST00000564468 TTC31Q49AM3 519 aaPredicted RBP13.76□□□□□ -0.21
CLK3-216ENST00000564468 ALFQ53S48 1182 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 EFHC2Q5JST6 749 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 PLA2G2CQ5R387 149 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 PPP1R15BQ5SWA1 713 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 LYSMD4Q5XG99 296 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 E4F1Q66K89 784 aaPredicted RBP13.76□□□□□ -0.21
CLK3-216ENST00000564468 ZNF776Q68DI1 518 aaPredicted RBP13.76□□□□□ -0.21
CLK3-216ENST00000564468 SPECC1LQ69YQ0 1117 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 PLEKHA7Q6IQ23 1121 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 SCYL2Q6P3W7 929 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 RABEPKQ7Z6M1 372 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 SLFN11Q7Z7L1 901 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 TMEFF1Q8IYR6 380 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 ZNF683Q8IZ20 524 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 ZNF366Q8N895 744 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 MYO19Q96H55 970 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 MRGPRX3Q96LB0 322 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 ISCUQ9H1K1 167 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 SLC6A17Q9H1V8 727 aa13.76□□□□□ -0.21
CLK3-216ENST00000564468 ILVBLA1L0T0 632 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 CCP110O43303 1012 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 RNF8O76064 485 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 CNTN5O94779 1100 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 IGLV3-19P01714 112 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 GYPCP04921 128 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 PLEKP08567 350 aaPredicted RBP13.75□□□□□ -0.21
CLK3-216ENST00000564468 HOXD12P35452 270 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 ETFBP38117 255 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 CTSOP43234 321 aaPredicted RBP13.75□□□□□ -0.21
CLK3-216ENST00000564468 TPMTP51580 245 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 ZNF33AQ06730 810 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 SCAPQ12770 1279 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 AASDHQ4L235 1098 aaPredicted RBP13.75□□□□□ -0.21
CLK3-216ENST00000564468 SYCP2LQ5T4T6 812 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 SH3PXD2AQ5TCZ1 1133 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 HGSNATQ68CP4 663 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 TMC6Q7Z403 805 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 SYT12Q8IV01 421 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 DRC7Q8IY82 874 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 FRMD1Q8N878 549 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 RNF214Q8ND24 703 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 FNIP1Q8TF40 1166 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 PIGKQ92643 395 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 ZNF653Q96CK0 615 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 ALG14Q96F25 216 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 RPL10LQ96L21 214 aaKnown RBP13.75□□□□□ -0.21
CLK3-216ENST00000564468 RSPH9Q9H1X1 276 aaPredicted RBP13.75□□□□□ -0.21
CLK3-216ENST00000564468 TMPRSS4Q9NRS4 437 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 WSB2Q9NYS7 404 aaPredicted RBP13.75□□□□□ -0.21
CLK3-216ENST00000564468 MPP6Q9NZW5 540 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 CNOT8Q9UFF9 292 aaKnown RBP13.75□□□□□ -0.21
CLK3-216ENST00000564468 ADAMTS1Q9UHI8 967 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 SLCO3A1Q9UIG8 710 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 NCKAP1Q9Y2A7 1128 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 OR51B4Q9Y5P0 310 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 SNX10Q9Y5X0 201 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 CACNA1EQ15878 2313 aa13.75□□□□□ -0.21
CLK3-216ENST00000564468 TTC34A8MYJ7 566 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 KHNYNO15037 678 aaKnown RBP13.74□□□□□ -0.21
CLK3-216ENST00000564468 SIN3BO75182 1162 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 RHOQP17081 205 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 PSMA2P25787 234 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 CASP14P31944 242 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 L1CAMP32004 1257 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 MAPKAPK2P49137 400 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 IRAK1P51617 712 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 RPS14P62263 151 aaKnown RBP13.74□□□□□ -0.21
CLK3-216ENST00000564468 SLC20A2Q08357 652 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 ACCSLQ4AC99 568 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 WDR45BQ5MNZ6 344 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 IL31Q6EBC2 164 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 RWDD4Q6NW29 188 aaKnown RBP13.74□□□□□ -0.21
CLK3-216ENST00000564468 TFAP2DQ7Z6R9 452 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 DSG4Q86SJ6 1040 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 DCAF4L2Q8NA75 395 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 CADM4Q8NFZ8 388 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 CEP76Q8TAP6 659 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 TBC1D31Q96DN5 1066 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 TOE1Q96GM8 510 aaKnown RBP13.74□□□□□ -0.21
CLK3-216ENST00000564468 ZNF419Q96HQ0 510 aaPredicted RBP13.74□□□□□ -0.21
CLK3-216ENST00000564468 CCDC114Q96M63 670 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 PCED1AQ9H1Q7 454 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 ZNHIT6Q9NWK9 470 aaKnown RBP13.74□□□□□ -0.21
CLK3-216ENST00000564468 DONSONQ9NYP3 566 aa13.74□□□□□ -0.21
CLK3-216ENST00000564468 FARP1Q9Y4F1 1045 aaPredicted RBP13.74□□□□□ -0.21
CLK3-216ENST00000564468 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.74□□□□□ -0.21
CLK3-216ENST00000564468 CXorf51AA0A1B0GTR3 108 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 TMEM191CA6NGB0 347 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 EIF3CLB5ME19 914 aaKnown RBP13.73□□□□□ -0.21
CLK3-216ENST00000564468 ATP9BO43861 1147 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 ADH1BP00325 375 aa13.73□□□□□ -0.21
CLK3-216ENST00000564468 HNRNPH3P31942 346 aaKnown RBP13.73□□□□□ -0.21
CLK3-216ENST00000564468 HTR7P34969 479 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms