RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.48□□□□□ -0.25
CLN3-210ENST00000563874 URGCPQ8TCY9 931 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 SLC2A14Q8TDB8 520 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 GRIP2Q9C0E4 1043 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 TXNRD2Q9NNW7 524 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 ERAP1Q9NZ08 941 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 STK39Q9UEW8 545 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 SLC39A10Q9ULF5 831 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 FZD10Q9ULW2 581 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 SLC4A7Q9Y6M7 1214 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 ZNF487B1APH4 448 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 PHGDHO43175 533 aaKnown RBP13.48□□□□□ -0.25
CLN3-210ENST00000563874 CLPTM1O96005 669 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 SETSIPP0DME0 302 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 GLDCP23378 1020 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 AVPR1AP37288 418 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 C6orf52Q5T4I8 152 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 SPNS2Q8IVW8 549 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 KYQ8NBH2 561 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 TASP1Q9H6P5 420 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 CHRAC1Q9NRG0 131 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 VANGL2Q9ULK5 521 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 LZTS1Q9Y250 596 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 HACD1B0YJ81 288 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 TPD52L2O43399 206 aaKnown RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 CRTAMO95727 393 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 TFAP2AP05549 437 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 RABGGTBP53611 331 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 BST2Q10589 180 aaKnown RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 TTLL12Q14166 644 aaPredicted RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 FAM187BQ17R55 369 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 LILRA2Q8N149 483 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 SPATA6LQ8N4H0 392 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 METTL25Q8N6Q8 603 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 BHLHE22Q8NFJ8 381 aaPredicted RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 HIC2Q96JB3 615 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 BTBD9Q96Q07 612 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 NAT9Q9BTE0 207 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 ILKAPQ9H0C8 392 aaPredicted RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 IARS2Q9NSE4 1012 aaKnown RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 DDX18Q9NVP1 670 aaKnown RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 GJD2Q9UKL4 321 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 AP4B1Q9Y6B7 739 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 MCM3APO60318 1980 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 PIGNO95427 931 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 THRAP10827 490 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 RANBP1P43487 201 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 NAGLUP54802 743 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 ADIGQ0VDE8 80 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 CEACAM7Q14002 265 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 R3HDM1Q15032 1099 aaKnown RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 PDCD2Q16342 344 aaPredicted RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 ARL13AQ5H913 290 aaPredicted RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 SPANXN3Q5MJ09 141 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 BNC2Q6ZN30 1099 aaPredicted RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 PTAR1Q7Z6K3 402 aaPredicted RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 ZDHHC17Q8IUH5 632 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 FERMT1Q9BQL6 677 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 NFKBIZQ9BYH8 718 aa13.47□□□□□ -0.25
CLN3-210ENST00000563874 SUDS3Q9H7L9 328 aaPredicted RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 EIF2B3Q9NR50 452 aaKnown RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 C20orf96Q9NUD7 363 aaPredicted RBP13.47□□□□□ -0.25
CLN3-210ENST00000563874 ZCWPW2A0A1B0GU75 182 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 KPNA7A9QM74 516 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 FAM72CH0Y354 149 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 PEX1O43933 1283 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 TRPA1O75762 1119 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 TOMM70O94826 608 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 PYGLP06737 847 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 SRGAP2BP0DMP2 458 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 PIM1P11309 404 aaPredicted RBP13.46□□□□□ -0.25
CLN3-210ENST00000563874 DPP6P42658 865 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 GRIA4P48058 902 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 NDUFV1P49821 464 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 SNX16P57768 344 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 NAB1Q13506 487 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 PDK1Q15118 436 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 KIZQ2M2Z5 673 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 NADK2Q4G0N4 442 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 LRRC23Q53EV4 343 aaPredicted RBP13.46□□□□□ -0.25
CLN3-210ENST00000563874 DALRD3Q5D0E6 543 aaKnown RBP13.46□□□□□ -0.25
CLN3-210ENST00000563874 FAM72AQ5TYM5 149 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 FAM72DQ6L9T8 149 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 FAM72BQ86X60 149 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 SULF1Q8IWU6 871 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 TTC39CQ8N584 583 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 ANKRD52Q8NB46 1076 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 PRICKLE1Q96MT3 831 aaPredicted RBP13.46□□□□□ -0.25
CLN3-210ENST00000563874 PRPF18Q99633 342 aaKnown RBP13.46□□□□□ -0.25
CLN3-210ENST00000563874 ACE2Q9BYF1 805 aaPredicted RBP13.46□□□□□ -0.25
CLN3-210ENST00000563874 LRRC40Q9H9A6 602 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 RGSL1A5PLK6 1076 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 MATN2O00339 956 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 VILLO15195 856 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 PRDX6P30041 224 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 MATKP42679 507 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 SLC26A2P50443 739 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 BCAT1P54687 386 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 MPP3Q13368 585 aa13.46□□□□□ -0.25
CLN3-210ENST00000563874 CYLC2Q14093 348 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms