RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 HS3ST4Q9Y661 456 aa16.21■□□□□ 0.19
CLK3-211ENST00000563297 ADAMTS20P59510 1910 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 TBC1D3DA0A087WVF3 549 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 TBC1D3IA0A087WXS9 549 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 TBC1D3EA0A087X179 549 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 TBC1D3KA0A087X1G2 549 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 TBC1D3FA6NER0 549 aaPredicted RBP16.2■□□□□ 0.18
CLK3-211ENST00000563297 TBC1D3LB9A6J9 549 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 PLK4O00444 970 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 ATP9BO43861 1147 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 TBC1D3HP0C7X1 549 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 NOS2P35228 1153 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 KRT9P35527 623 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 MTIF2P46199 727 aaKnown RBP16.2■□□□□ 0.18
CLK3-211ENST00000563297 IRAK1P51617 712 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 METAP1P53582 386 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 UBE2HP62256 183 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 CENPCQ03188 943 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 SHBQ15464 509 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 C5orf22Q49AR2 442 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 PTPN20Q4JDL3 420 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 TBC1D3GQ6DHY5 549 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 TBC1D3CQ6IPX1 549 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 DPY19L2P1Q6NXN4 242 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 SLC26A9Q7LBE3 791 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 C14orf80Q86SX3 495 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 SLC47A2Q86VL8 602 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 GATAD2AQ86YP4 633 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 TBC1D3Q8IZP1 549 aaPredicted RBP16.2■□□□□ 0.18
CLK3-211ENST00000563297 MLKLQ8NB16 471 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 FAM131CQ96AQ9 280 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 SERAC1Q96JX3 654 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 NOX5Q96PH1 765 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 AASDHPPTQ9NRN7 309 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 ARHGAP20Q9P2F6 1191 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 SARDHQ9UL12 918 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 TPX2Q9ULW0 747 aaKnown RBP16.2■□□□□ 0.18
CLK3-211ENST00000563297 LHX6Q9UPM6 363 aa16.2■□□□□ 0.18
CLK3-211ENST00000563297 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.19■□□□□ 0.18
CLK3-211ENST00000563297 M0QYT0 321 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 LATO43561 262 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 PAGE1O75459 146 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 DAB1O75553 588 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 PNMA6AP0CW24 399 aaPredicted RBP16.19■□□□□ 0.18
CLK3-211ENST00000563297 GGCXP38435 758 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 SNX16P57768 344 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 PPP2CBP62714 309 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 PPP2CAP67775 309 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 MTA1Q13330 715 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 ZNF177Q13360 481 aaPredicted RBP16.19■□□□□ 0.18
CLK3-211ENST00000563297 DLG2Q15700 870 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 ACCSLQ4AC99 568 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 FAM71AQ8IYT1 594 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 GALNT15Q8N3T1 639 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 ZNF397Q8NF99 534 aaPredicted RBP16.19■□□□□ 0.18
CLK3-211ENST00000563297 MDM1Q8TC05 714 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 OR8D1Q8WZ84 308 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 NPY6RQ99463 290 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 SIK2Q9H0K1 926 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 KDM4CQ9H3R0 1056 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 PLCB1Q9NQ66 1216 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 PPM1HQ9ULR3 514 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 TBC1D30Q9Y2I9 924 aa16.19■□□□□ 0.18
CLK3-211ENST00000563297 TRABD2BA6NFA1 517 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 TLR4O00206 839 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 MCF2LO15068 1137 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 RTN2O75298 545 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 CLDN11O75508 207 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 CNTN5O94779 1100 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 ADCY5O95622 1261 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 HOXB3P14651 431 aaPredicted RBP16.18■□□□□ 0.18
CLK3-211ENST00000563297 TFE3P19532 575 aaPredicted RBP16.18■□□□□ 0.18
CLK3-211ENST00000563297 CAMK2BQ13554 666 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 SMAD1Q15797 465 aaKnown RBP16.18■□□□□ 0.18
CLK3-211ENST00000563297 MAN2A1Q16706 1144 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 TPD52L1Q16890 204 aaPredicted RBP16.18■□□□□ 0.18
CLK3-211ENST00000563297 INAVAQ3KP66 663 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 CCDC157Q569K6 752 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 OTUD1Q5VV17 481 aaPredicted RBP16.18■□□□□ 0.18
CLK3-211ENST00000563297 FAM46CQ5VWP2 391 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 DSG4Q86SJ6 1040 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 SAP25Q8TEE9 199 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 WDCPQ9H6R7 721 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 ANLNQ9NQW6 1124 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 GDF3Q9NR23 364 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 PIGVQ9NUD9 493 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 FTSJ1Q9UET6 329 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 SLC25A13Q9UJS0 675 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 GPSM3Q9Y4H4 160 aa16.18■□□□□ 0.18
CLK3-211ENST00000563297 NBEAQ8NFP9 2946 aa16.17■□□□□ 0.18
CLK3-211ENST00000563297 FAM149AA5PLN7 773 aa16.17■□□□□ 0.18
CLK3-211ENST00000563297 I6L893 689 aaPredicted RBP16.17■□□□□ 0.18
CLK3-211ENST00000563297 SLC7A4O43246 635 aa16.17■□□□□ 0.18
CLK3-211ENST00000563297 PLRG1O43660 514 aaKnown RBP16.17■□□□□ 0.18
CLK3-211ENST00000563297 ITGAVP06756 1048 aa16.17■□□□□ 0.18
CLK3-211ENST00000563297 CXCR3P49682 368 aa16.17■□□□□ 0.18
CLK3-211ENST00000563297 CDH4P55283 916 aa16.17■□□□□ 0.18
CLK3-211ENST00000563297 NXPH1P58417 271 aa16.17■□□□□ 0.18
CLK3-211ENST00000563297 BPIFB4P59827 614 aa16.17■□□□□ 0.18
CLK3-211ENST00000563297 RNASE9P60153 205 aaKnown RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms