RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 HMGB4Q8WW32 186 aa17.15■□□□□ 0.34
CLK3-207ENST00000562389 KCTD15Q96SI1 283 aaPredicted RBP17.15■□□□□ 0.34
CLK3-207ENST00000562389 C2orf49Q9BVC5 232 aaPredicted RBP17.15■□□□□ 0.34
CLK3-207ENST00000562389 SEMA4AQ9H3S1 761 aa17.15■□□□□ 0.34
CLK3-207ENST00000562389 CATSPERBQ9H7T0 1116 aa17.15■□□□□ 0.34
CLK3-207ENST00000562389 NDFIP2Q9NV92 336 aa17.15■□□□□ 0.34
CLK3-207ENST00000562389 BCCIPQ9P287 314 aaKnown RBP eCLIP17.15■□□□□ 0.34
CLK3-207ENST00000562389 SUN2Q9UH99 717 aa17.15■□□□□ 0.34
CLK3-207ENST00000562389 PCDHA13Q9Y5I0 950 aa17.15■□□□□ 0.34
CLK3-207ENST00000562389 A0A0D9SEW6 157 aa17.14■□□□□ 0.33
CLK3-207ENST00000562389 EEF2KO00418 725 aaKnown RBP17.14■□□□□ 0.33
CLK3-207ENST00000562389 ETFBP38117 255 aa17.14■□□□□ 0.33
CLK3-207ENST00000562389 ARHGAP25P42331 645 aa17.14■□□□□ 0.33
CLK3-207ENST00000562389 GSDMDP57764 484 aa17.14■□□□□ 0.33
CLK3-207ENST00000562389 GNA12Q03113 381 aa17.14■□□□□ 0.33
CLK3-207ENST00000562389 CAMK2GQ13555 558 aaPredicted RBP17.14■□□□□ 0.33
CLK3-207ENST00000562389 DPYSL2Q16555 572 aa17.14■□□□□ 0.33
CLK3-207ENST00000562389 HADHQ16836 314 aaKnown RBP17.14■□□□□ 0.33
CLK3-207ENST00000562389 SMTNL2Q2TAL5 461 aa17.14■□□□□ 0.33
CLK3-207ENST00000562389 RAD9BQ6WBX8 426 aa17.14■□□□□ 0.33
CLK3-207ENST00000562389 ZWILCHQ9H900 591 aa17.14■□□□□ 0.33
CLK3-207ENST00000562389 FBRSQ9HAH7 460 aa17.14■□□□□ 0.33
CLK3-207ENST00000562389 GRPEL1Q9HAV7 217 aa17.14■□□□□ 0.33
CLK3-207ENST00000562389 SLC25A13Q9UJS0 675 aa17.14■□□□□ 0.33
CLK3-207ENST00000562389 GOLGA6L3A6NEY3 463 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 ZBTB24O43167 697 aaPredicted RBP17.13■□□□□ 0.33
CLK3-207ENST00000562389 IPO7O95373 1038 aaKnown RBP17.13■□□□□ 0.33
CLK3-207ENST00000562389 RARAP10276 462 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 NDUFV2P19404 249 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 NNMTP40261 264 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 HCAR3P49019 387 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 NUMBP49757 651 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 STK19P49842 368 aaPredicted RBP17.13■□□□□ 0.33
CLK3-207ENST00000562389 COPAP53621 1224 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 HADHBP55084 474 aaKnown RBP17.13■□□□□ 0.33
CLK3-207ENST00000562389 HNRNPA1L2Q32P51 320 aaKnown RBP17.13■□□□□ 0.33
CLK3-207ENST00000562389 KCNT1Q5JUK3 1230 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 TXNRD3NBQ6F5E7 133 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 RFX8Q6ZV50 586 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 ZNF366Q8N895 744 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 OR7D4Q8NG98 312 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 GAB3Q8WWW8 586 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 RPL10LQ96L21 214 aaKnown RBP17.13■□□□□ 0.33
CLK3-207ENST00000562389 PHOX2BQ99453 314 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 TPSD1Q9BZJ3 242 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 MAGEH1Q9H213 219 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 EPC1Q9H2F5 836 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.13■□□□□ 0.33
CLK3-207ENST00000562389 DONSONQ9NYP3 566 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 DNAI1Q9UI46 699 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 VPS51Q9UID3 782 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 HS3ST2Q9Y278 367 aa17.13■□□□□ 0.33
CLK3-207ENST00000562389 A0A0A6YYK5 440 aaPredicted RBP17.12■□□□□ 0.33
CLK3-207ENST00000562389 EDDM13A0A1B0GTR0 161 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 CXorf51AA0A1B0GTR3 108 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 HRO43593 1189 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 SNAP91O60641 907 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 RAMP2O60895 175 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 RPP40O75818 363 aaKnown RBP17.12■□□□□ 0.33
CLK3-207ENST00000562389 C7P10643 843 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 GOT1P17174 413 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 MESDQ14696 234 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 PPP6R3Q5H9R7 873 aaPredicted RBP17.12■□□□□ 0.33
CLK3-207ENST00000562389 CPNE8Q86YQ8 564 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 PGBD3Q8N328 593 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 SH2D3CQ8N5H7 860 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 OR2T3Q8NH03 318 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 HSPH1Q92598 858 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 ARHGEF2Q92974 986 aaKnown RBP17.12■□□□□ 0.33
CLK3-207ENST00000562389 ERLEC1Q96DZ1 483 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 MRGPRX1Q96LB2 322 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 ACE2Q9BYF1 805 aaPredicted RBP17.12■□□□□ 0.33
CLK3-207ENST00000562389 ATP13A1Q9HD20 1204 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 PRSS16Q9NQE7 514 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 SLCO3A1Q9UIG8 710 aa17.12■□□□□ 0.33
CLK3-207ENST00000562389 TARSL2A2RTX5 802 aaKnown RBP17.11■□□□□ 0.33
CLK3-207ENST00000562389 TTC34A8MYJ7 566 aa17.11■□□□□ 0.33
CLK3-207ENST00000562389 H3BRJ5 948 aa17.11■□□□□ 0.33
CLK3-207ENST00000562389 ATP9BO43861 1147 aa17.11■□□□□ 0.33
CLK3-207ENST00000562389 ZMPSTE24O75844 475 aa17.11■□□□□ 0.33
CLK3-207ENST00000562389 PLA2G5P39877 138 aa17.11■□□□□ 0.33
CLK3-207ENST00000562389 ARL4AP40617 200 aa17.11■□□□□ 0.33
CLK3-207ENST00000562389 SSR1P43307 286 aaKnown RBP17.11■□□□□ 0.33
CLK3-207ENST00000562389 YBEYP58557 167 aaPredicted RBP17.11■□□□□ 0.33
CLK3-207ENST00000562389 TAS2R40P59535 323 aa17.11■□□□□ 0.33
CLK3-207ENST00000562389 SRSF5Q13243 272 aaKnown RBP17.11■□□□□ 0.33
CLK3-207ENST00000562389 POLD3Q15054 466 aaPredicted RBP17.11■□□□□ 0.33
CLK3-207ENST00000562389 USP39Q53GS9 565 aaKnown RBP17.11■□□□□ 0.33
CLK3-207ENST00000562389 IL31Q6EBC2 164 aa17.11■□□□□ 0.33
CLK3-207ENST00000562389 METTL3Q86U44 580 aaKnown RBP17.11■□□□□ 0.33
CLK3-207ENST00000562389 UMODL1-AS1Q8N2C9 162 aa17.11■□□□□ 0.33
CLK3-207ENST00000562389 FAM71BQ8TC56 605 aa17.11■□□□□ 0.33
CLK3-207ENST00000562389 FRS2Q8WU20 508 aa17.11■□□□□ 0.33
CLK3-207ENST00000562389 NKD2Q969F2 451 aaPredicted RBP17.11■□□□□ 0.33
CLK3-207ENST00000562389 FAM122AQ96E09 287 aa17.11■□□□□ 0.33
CLK3-207ENST00000562389 SPON2Q9BUD6 331 aa17.11■□□□□ 0.33
CLK3-207ENST00000562389 MKRN2Q9H000 416 aaKnown RBP17.11■□□□□ 0.33
CLK3-207ENST00000562389 NOL6Q9H6R4 1146 aaKnown RBP17.11■□□□□ 0.33
CLK3-207ENST00000562389 CWC15Q9P013 229 aaKnown RBP17.11■□□□□ 0.33
CLK3-207ENST00000562389 REXO2Q9Y3B8 237 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms