RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ADCY2Q08462 1091 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 DDX39BQ13838 428 aaKnown RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 PLEKHA7Q6IQ23 1121 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 TRMT11Q7Z4G4 463 aaKnown RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 GLT6D1Q7Z4J2 308 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 LRRTM3Q86VH5 581 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 TRAPPC5Q8IUR0 188 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 HDAC7Q8WUI4 952 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 PTPRHQ9HD43 1115 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 HCFC1R1Q9NWW0 138 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 STK39Q9UEW8 545 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 LIMD1Q9UGP4 676 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 AGO1Q9UL18 857 aaKnown RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 RAB23Q9ULC3 237 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 COG5Q9UP83 839 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 REXO2Q9Y3B8 237 aaKnown RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 ASB3Q9Y575 518 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 ANKRD31Q8N7Z5 1873 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 SLC31A1O15431 190 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 CRTAMO95727 393 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 HADHAP40939 763 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 POLR2LP62875 67 aaKnown RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 PLCL1Q15111 1095 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 SETMARQ53H47 684 aaPredicted RBP9.43□□□□□ -0.9
VPS39-205ENST00000562258 LY6G5CQ5SRR4 150 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 OR52K1Q8NGK4 314 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 OR14C36Q8NHC7 312 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 BCAS4Q8TDM0 211 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 MAML1Q92585 1016 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 CSPG4P5Q96PW8 444 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 TASP1Q9H6P5 420 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 PCDHGC3Q9UN70 934 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 CRYL1Q9Y2S2 319 aa9.43□□□□□ -0.9
VPS39-205ENST00000562258 C1orf232A0A0U1RR37 186 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 ADAM12O43184 909 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 NCF2P19878 526 aaPredicted RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 GALNT3Q14435 633 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 UGP2Q16851 508 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 MMEL1Q495T6 779 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 MON1BQ7L1V2 547 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 TMEM173Q86WV6 379 aaPredicted RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 IFNLR1Q8IU57 520 aaPredicted RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 BPIFB1Q8TDL5 484 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 KATNBL1Q9H079 304 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 PIGVQ9NUD9 493 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 KLHL14Q9P2G3 628 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 SALL4Q9UJQ4 1053 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 INPP4BO15327 924 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 PJA2O43164 708 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 HAPLN1P10915 354 aaPredicted RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 SSTR1P30872 391 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 PITX1P78337 314 aaPredicted RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 RBBP5Q15291 538 aaKnown RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 CA9Q16790 459 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 ANKRD20A2Q5SQ80 823 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 ANKRD20A1Q5TYW2 823 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 NYAP1Q6ZVC0 841 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 LRRC6Q86X45 466 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 KATNAL2Q8IYT4 538 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 CYB5D2Q8WUJ1 264 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 PIWIL1Q96J94 861 aaKnown RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 MLPHQ9BV36 600 aaPredicted RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 ADAM7Q9H2U9 754 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 PAK6Q9NQU5 681 aaPredicted RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 TMLHEQ9NVH6 421 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 FCF1Q9Y324 198 aaKnown RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 HCFC2Q9Y5Z7 792 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 C2CD4BA6NLJ0 364 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 HIDE1A8MVS5 230 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 C1QTNF3-AMACRE9PGA6 284 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 AP3B1O00203 1094 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 PYGLP06737 847 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 CTSEP14091 401 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 HNRNPH3P31942 346 aaKnown RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 RGS4P49798 205 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 LIG3P49916 1009 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 LBRQ14739 615 aaKnown RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 IMPG1Q17R60 797 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 SYDE1Q6ZW31 735 aaPredicted RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 DET1Q7L5Y6 550 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 CALML6Q8TD86 181 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 HMGB4Q8WW32 186 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 OXCT2Q9BYC2 517 aaPredicted RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 SHCBP1LQ9BZQ2 653 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 LRRC40Q9H9A6 602 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 ETNK1Q9HBU6 452 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 A0A1B0GVM2 712 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 HEATR9A2RTY3 570 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 TCAF2A6NFQ2 919 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 CHEK2O96017 543 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 PECAM1P16284 738 aaPredicted RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 SPRP35270 261 aaPredicted RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 PCK1P35558 622 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 ELK3P41970 407 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 NR2C2P49116 596 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 DGKEP52429 567 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 ERVK-21P61565 698 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 CDH17Q12864 832 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 ARMC6Q6NXE6 501 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms