RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 RNF219Q5W0B1 726 aaPredicted RBP19.57■□□□□ 0.72
VPS35-202ENST00000561713 CXorf57Q6NSI4 855 aaKnown RBP19.57■□□□□ 0.72
VPS35-202ENST00000561713 NCEH1Q6PIU2 408 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 OR52K2Q8NGK3 314 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 FAM81BQ96LP2 452 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 SYNCQ9H7C4 482 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 VANGL2Q9ULK5 521 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 NCKAP1Q9Y2A7 1128 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 SNX10Q9Y5X0 201 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 ITIH6Q6UXX5 1313 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 EDDM13A0A1B0GTR0 161 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 A0A1W2PPC4 97 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 E9PAM4 449 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 PES1O00541 588 aaKnown RBP19.56■□□□□ 0.72
VPS35-202ENST00000561713 RNASEH2AO75792 299 aaKnown RBP19.56■□□□□ 0.72
VPS35-202ENST00000561713 PRB1P04280 392 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 ITPKBP27987 946 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 ABCG1P45844 678 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 ECT2LQ008S8 904 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 PTK2Q05397 1052 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 SHBQ15464 509 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 DPY19L2P1Q6NXN4 242 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 FBXL22Q6P050 247 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 C11orf57Q6ZUT1 292 aaPredicted RBP19.56■□□□□ 0.72
VPS35-202ENST00000561713 USP30Q70CQ3 517 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 AADATQ8N5Z0 425 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 RPRD1AQ96P16 312 aaPredicted RBP19.56■□□□□ 0.72
VPS35-202ENST00000561713 ELF4Q99607 663 aaPredicted RBP19.56■□□□□ 0.72
VPS35-202ENST00000561713 NEUROG2Q9H2A3 272 aa19.56■□□□□ 0.72
VPS35-202ENST00000561713 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.56■□□□□ 0.72
VPS35-202ENST00000561713 A0A1B0GVM2 712 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 TCAF2A6NFQ2 919 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 ENC1O14682 589 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 WNT9AO14904 365 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 SRPRAP08240 638 aaKnown RBP19.55■□□□□ 0.72
VPS35-202ENST00000561713 JUPP14923 745 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 ABCB4P21439 1286 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 CCR1P32246 355 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 KCNJ12Q14500 433 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 POM121L1PQ3SYA9 428 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 C2CD6Q53TS8 623 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 EFHC1Q5JVL4 640 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 TAF3Q5VWG9 929 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 C14orf80Q86SX3 495 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 CNDP2Q96KP4 475 aaKnown RBP19.55■□□□□ 0.72
VPS35-202ENST00000561713 NOX5Q96PH1 765 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 NUP62CLQ9H1M0 184 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 NDST4Q9H3R1 872 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 ANLNQ9NQW6 1124 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 ASNSD1Q9NWL6 643 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 SCML1Q9UN30 329 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 PCDHGA1Q9Y5H4 931 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 HS3ST4Q9Y661 456 aa19.55■□□□□ 0.72
VPS35-202ENST00000561713 COL5A1P20908 1838 aaPredicted RBP19.54■□□□□ 0.72
VPS35-202ENST00000561713 RNASEH1O60930 286 aaKnown RBP19.54■□□□□ 0.72
VPS35-202ENST00000561713 PAGE1O75459 146 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 LDOC1O95751 146 aaPredicted RBP19.54■□□□□ 0.72
VPS35-202ENST00000561713 ITGAVP06756 1048 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 KRT9P35527 623 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 RNASE9P60153 205 aaKnown RBP19.54■□□□□ 0.72
VPS35-202ENST00000561713 SEMG2Q02383 582 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 AUHQ13825 339 aaKnown RBP19.54■□□□□ 0.72
VPS35-202ENST00000561713 VWA3BQ502W6 1294 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 RABGAP1LQ5R372 815 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 SLC26A9Q7LBE3 791 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 FAM114A1Q8IWE2 563 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 SAP25Q8TEE9 199 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 PTPRN2Q92932 1015 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 NXPE2Q96DL1 559 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 UBL7Q96S82 380 aaPredicted RBP19.54■□□□□ 0.72
VPS35-202ENST00000561713 FAM129BQ96TA1 746 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 OMDQ99983 421 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 TUBGCP2Q9BSJ2 902 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 AASDHPPTQ9NRN7 309 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 TMPRSS4Q9NRS4 437 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 SAMSN1Q9NSI8 373 aaKnown RBP19.54■□□□□ 0.72
VPS35-202ENST00000561713 PIGVQ9NUD9 493 aa19.54■□□□□ 0.72
VPS35-202ENST00000561713 I6L893 689 aaPredicted RBP19.53■□□□□ 0.72
VPS35-202ENST00000561713 M0QYT0 321 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 TLX3O43711 291 aaPredicted RBP19.53■□□□□ 0.72
VPS35-202ENST00000561713 RFPL3O75679 317 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 IL1BP01584 269 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 GLI1P08151 1106 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 SLC8A1P32418 973 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 HNF1BP35680 557 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 SULT1E1P49888 294 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 PPP2CBP62714 309 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 PPP2CAP67775 309 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 SLC6A3Q01959 620 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 KCNMA1Q12791 1236 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 DRAP1Q14919 205 aaPredicted RBP19.53■□□□□ 0.72
VPS35-202ENST00000561713 C6orf118Q5T5N4 469 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 FAM71AQ8IYT1 594 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 EID2Q8N6I1 236 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 SKA1Q96BD8 255 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 SIK2Q9H0K1 926 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 ASH1LQ9NR48 2969 aaKnown RBP19.53■□□□□ 0.72
VPS35-202ENST00000561713 TAB2Q9NYJ8 693 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 SLC12A6Q9UHW9 1150 aa19.53■□□□□ 0.72
VPS35-202ENST00000561713 KNTC1P50748 2209 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms