RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CLDN11O75508 207 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 GFPT2O94808 682 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 TRIM16O95361 564 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 ADH1BP00325 375 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 EEF1GP26641 437 aaKnown RBP10.51□□□□□ -0.73
LDLR-214ENST00000560628 CDH5P33151 784 aaPredicted RBP10.51□□□□□ -0.73
LDLR-214ENST00000560628 GABRB2P47870 512 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 GRIA4P48058 902 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 C21orf59P57076 290 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 IL9RQ01113 521 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 DLG2Q15700 870 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 ALFQ53S48 1182 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 NAA35Q5VZE5 725 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 SND1Q7KZF4 910 aaKnown RBP eCLIP10.51□□□□□ -0.732e-8■■■■□ 19.9
LDLR-214ENST00000560628 RAB44Q7Z6P3 723 aaPredicted RBP10.51□□□□□ -0.73
LDLR-214ENST00000560628 XYLT1Q86Y38 959 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 ENOX1Q8TC92 643 aaKnown RBP10.51□□□□□ -0.73
LDLR-214ENST00000560628 STK33Q9BYT3 514 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 MUC3BQ9H195 1237 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 AASDHPPTQ9NRN7 309 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 ARHGEF38Q9NXL2 777 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 RRN3Q9NYV6 651 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 MPP6Q9NZW5 540 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 ADAMTS1Q9UHI8 967 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 SLC25A13Q9UJS0 675 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 SARDHQ9UL12 918 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 STAP1Q9ULZ2 295 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 MSRB2Q9Y3D2 182 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 NEUROG3Q9Y4Z2 214 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 TBC1D3DA0A087WVF3 549 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 TBC1D3IA0A087WXS9 549 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 TBC1D3EA0A087X179 549 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 TBC1D3KA0A087X1G2 549 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 TBC1D3FA6NER0 549 aaPredicted RBP10.5□□□□□ -0.73
LDLR-214ENST00000560628 TBC1D3LB9A6J9 549 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 F8VZ95 297 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 ATP9BO43861 1147 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 SNAP91O60641 907 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 SRGAP2O75044 1071 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 RTN2O75298 545 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 MT-CO1P00395 513 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 F9P00740 461 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 WNT1P04628 370 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 RHOCP08134 193 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 ATXN1LP0C7T5 689 aaKnown RBP10.5□□□□□ -0.73
LDLR-214ENST00000560628 TBC1D3HP0C7X1 549 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 ZNF883P0CG24 379 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 DRD3P35462 400 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 FLT3P36888 993 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 ANP32AP39687 249 aaKnown RBP10.5□□□□□ -0.73
LDLR-214ENST00000560628 CTSKP43235 329 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 ADPRHP54922 357 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 CDH4P55283 916 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 POLR2FP61218 127 aaKnown RBP10.5□□□□□ -0.73
LDLR-214ENST00000560628 RACK1P63244 317 aaKnown RBP10.5□□□□□ -0.73
LDLR-214ENST00000560628 MTA1Q13330 715 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 ELAVL3Q14576 367 aaKnown RBP10.5□□□□□ -0.73
LDLR-214ENST00000560628 SUZ12Q15022 739 aaKnown RBP10.5□□□□□ -0.73
LDLR-214ENST00000560628 KRT31Q15323 416 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 SLC25A52Q3SY17 297 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 CCDC157Q569K6 752 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 CT47A1Q5JQC4 288 aaPredicted RBP10.5□□□□□ -0.73
LDLR-214ENST00000560628 BRMS1LQ5PSV4 323 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 TBC1D3GQ6DHY5 549 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 SMYD5Q6GMV2 418 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 TBC1D3CQ6IPX1 549 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 TRNP1Q6NT89 227 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 LRRC31Q6UY01 552 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 DBX2Q6ZNG2 339 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 Q6ZVU0 165 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 TFAP2DQ7Z6R9 452 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 ZNF683Q8IZ20 524 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 TBC1D3Q8IZP1 549 aaPredicted RBP10.5□□□□□ -0.73
LDLR-214ENST00000560628 KDF1Q8NAX2 398 aaPredicted RBP10.5□□□□□ -0.73
LDLR-214ENST00000560628 GPT2Q8TD30 523 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 SLC20A1Q8WUM9 679 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 ADAMTS14Q8WXS8 1223 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 OR8D1Q8WZ84 308 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 NT5C3BQ969T7 300 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 CFAP57Q96MR6 1250 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 SPAG5Q96R06 1193 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 ACE2Q9BYF1 805 aaPredicted RBP10.5□□□□□ -0.73
LDLR-214ENST00000560628 GANQ9H2C0 597 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 NLRC4Q9NPP4 1024 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 FAM207AQ9NSI2 230 aaPredicted RBP10.5□□□□□ -0.73
LDLR-214ENST00000560628 FANCLQ9NW38 375 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 FZD4Q9ULV1 537 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 APOBEC2Q9Y235 224 aaKnown RBP10.5□□□□□ -0.73
LDLR-214ENST00000560628 TBC1D30Q9Y2I9 924 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 PCDHGB2Q9Y5G2 931 aa10.5□□□□□ -0.73
LDLR-214ENST00000560628 CABIN1Q9Y6J0 2220 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 A0A0D9SEW6 157 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 DRGXA6NNA5 263 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 K7ERQ8 282 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 VILLO15195 856 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 EPHB6O15197 1021 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 FLRT2O43155 660 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 LSM8O95777 96 aaKnown RBP10.49□□□□□ -0.73
LDLR-214ENST00000560628 CHRNB2P17787 502 aa10.49□□□□□ -0.73
LDLR-214ENST00000560628 MAT2AP31153 395 aaKnown RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms