RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 MIPP30301 263 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 ATP5C1P36542 298 aaKnown RBP12.16□□□□□ -0.46
LDLR-212ENST00000560467 GRIA2P42262 883 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 COPS2P61201 443 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 SIM1P81133 766 aaPredicted RBP12.16□□□□□ -0.46
LDLR-212ENST00000560467 EFHC2Q5JST6 749 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 EOGTQ5NDL2 527 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 C10orf120Q5SQS8 335 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 LY6G5CQ5SRR4 150 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 ACBD5Q5T8D3 534 aaPredicted RBP12.16□□□□□ -0.46
LDLR-212ENST00000560467 PIP4P1Q86T03 277 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 PSTKQ8IV42 348 aaKnown RBP12.16□□□□□ -0.46
LDLR-212ENST00000560467 KATNAL2Q8IYT4 538 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 PGBD3Q8N328 593 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 OR2I1PQ8NGU4 316 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 EXD1Q8NHP7 514 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 NDRG1Q92597 394 aaKnown RBP12.16□□□□□ -0.46
LDLR-212ENST00000560467 ERLEC1Q96DZ1 483 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 ZFRQ96KR1 1074 aaKnown RBP12.16□□□□□ -0.46
LDLR-212ENST00000560467 PSMB7Q99436 277 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 TRIM7Q9C029 511 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 GOLPH3Q9H4A6 298 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 WDCPQ9H6R7 721 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 GMIPQ9P107 970 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 STIM2Q9P246 746 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 PILRBQ9UKJ0 227 aa12.16□□□□□ -0.46
LDLR-212ENST00000560467 ANKRD11Q6UB99 2663 aaPredicted RBP12.16□□□□□ -0.46
LDLR-212ENST00000560467 FAM92AA1XBS5 289 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 TRUB2O95900 331 aaKnown RBP12.15□□□□□ -0.46
LDLR-212ENST00000560467 APOEP02649 317 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 KRT1P04264 644 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 CCR1P32246 355 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 CXCR5P32302 372 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 EIF2DP41214 584 aaKnown RBP12.15□□□□□ -0.46
LDLR-212ENST00000560467 ZNF135P52742 658 aaPredicted RBP12.15□□□□□ -0.46
LDLR-212ENST00000560467 FAM193AP78312 1265 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 OGDHQ02218 1023 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 PDK2Q15119 407 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 LONRF2Q1L5Z9 754 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 C15orf59Q2T9L4 293 aaPredicted RBP12.15□□□□□ -0.46
LDLR-212ENST00000560467 HSF5Q4G112 596 aaPredicted RBP12.15□□□□□ -0.46
LDLR-212ENST00000560467 ERMARDQ5T6L9 678 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 PEAR1Q5VY43 1037 aaPredicted RBP12.15□□□□□ -0.46
LDLR-212ENST00000560467 SLC23A3Q6PIS1 610 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 ETFBKMTQ8IXQ9 262 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 ZNF276Q8N554 614 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 KIAA1958Q8N8K9 716 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 NAT16Q8N8M0 369 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.15□□□□□ -0.46
LDLR-212ENST00000560467 TEKT4Q8WW24 435 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 CENPIQ92674 756 aaPredicted RBP12.15□□□□□ -0.46
LDLR-212ENST00000560467 WBP2Q969T9 261 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 PGAP3Q96FM1 320 aaPredicted RBP12.15□□□□□ -0.46
LDLR-212ENST00000560467 CAPZA3Q96KX2 299 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 NPY6RQ99463 290 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 GTPBP2Q9BX10 602 aaKnown RBP12.15□□□□□ -0.46
LDLR-212ENST00000560467 SLC32A1Q9H598 525 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 HOMER3Q9NSC5 361 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.15□□□□□ -0.467e-12■□□□□ 11
LDLR-212ENST00000560467 MARCH2Q9P0N8 246 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 DNMT3LQ9UJW3 386 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 HCN2Q9UL51 889 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 PACSIN2Q9UNF0 486 aaPredicted RBP12.15□□□□□ -0.46
LDLR-212ENST00000560467 NEUROG3Q9Y4Z2 214 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 KIAA1549LQ6ZVL6 1849 aa12.15□□□□□ -0.46
LDLR-212ENST00000560467 ZNF638Q14966 1978 aaKnown RBP12.14□□□□□ -0.47
LDLR-212ENST00000560467 A0A0A0MRY4 1105 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 LRRD1A4D1F6 860 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 CTAGE15A4D2H0 777 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 TBC1D3BA6NDS4 549 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.14□□□□□ -0.47
LDLR-212ENST00000560467 PGRMC1O00264 195 aaKnown RBP12.14□□□□□ -0.47
LDLR-212ENST00000560467 TRIM24O15164 1050 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 DAPK3O43293 454 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 COCHO43405 550 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 LRCH4O75427 683 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 TJP3O95049 919 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 CTAGE8P0CG41 777 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 GABRG2P18507 467 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 ARL4AP40617 200 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 WASP42768 502 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 TNFRSF4P43489 277 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 TUBP50607 506 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 COG7P83436 770 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 RPL6Q02878 288 aaKnown RBP12.14□□□□□ -0.47
LDLR-212ENST00000560467 EFEMP1Q12805 493 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 SEMA3BQ13214 749 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 TFDP2Q14188 446 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 PPP2R5EQ16537 467 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 BRMS1LQ5PSV4 323 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 SYPL2Q5VXT5 272 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 SCD5Q86SK9 330 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 CTAGE6Q86UF2 777 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 DDX42Q86XP3 938 aaKnown RBP eCLIP12.14□□□□□ -0.47
LDLR-212ENST00000560467 MIB1Q86YT6 1006 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 UNC45BQ8IWX7 931 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 BBS7Q8IWZ6 715 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 CTAGE4Q8IX94 777 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 ZNF513Q8N8E2 541 aaPredicted RBP12.14□□□□□ -0.47
LDLR-212ENST00000560467 HSPH1Q92598 858 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms