RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 SDR42E2A6NKP2 422 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 RASA4BC9J798 803 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 F5H423 210 aaPredicted RBP12.97□□□□□ -0.33
USP3-213ENST00000559711 POC1B-GALNT4F8VUJ3 575 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 RASA4O43374 803 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 C1QAP02745 245 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 NFKB1P19838 968 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 IFNAR2P48551 515 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 MAPKAPK2P49137 400 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 SLC11A2P49281 568 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 NR1H3Q13133 447 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 PABPC1LQ4VXU2 614 aaKnown RBP12.97□□□□□ -0.33
USP3-213ENST00000559711 FAM133BQ5BKY9 247 aaKnown RBP12.97□□□□□ -0.33
USP3-213ENST00000559711 ADGRD1Q6QNK2 874 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 TMC7Q7Z402 723 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 TFAP2DQ7Z6R9 452 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 C7orf61Q8IZ16 206 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 KLHL5Q96PQ7 755 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 IL21Q9HBE4 155 aa12.97□□□□□ -0.33
USP3-213ENST00000559711 PSMC3IPQ9P2W1 217 aaPredicted RBP12.97□□□□□ -0.33
USP3-213ENST00000559711 ZNF638Q14966 1978 aaKnown RBP12.96□□□□□ -0.33
USP3-213ENST00000559711 LCHNA4D1U4 455 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 C2orf78A6NCI8 922 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 F5H5T6 163 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 PSMD3O43242 534 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 TLL1O43897 1013 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 STC2O76061 302 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 PEX11BO96011 259 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 CPP00450 1065 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 KLKB1P03952 638 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 ADH1AP07327 375 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 PRKCHP24723 683 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 STX2P32856 288 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 YBEYP58557 167 aaPredicted RBP12.96□□□□□ -0.33
USP3-213ENST00000559711 GNGT1P63211 74 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 GUCY1A3Q02108 690 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 HNRNPDQ14103 355 aaKnown RBP12.96□□□□□ -0.33
USP3-213ENST00000559711 ANO4Q32M45 955 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 STEAP4Q687X5 459 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 UNC5AQ6ZN44 842 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 CCNJLQ8IV13 435 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 MPP5Q8N3R9 675 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 ARNTL2Q8WYA1 636 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 MYEOVQ96EZ4 313 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 HMCESQ96FZ2 354 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 FCRL5Q96RD9 977 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 NAT9Q9BTE0 207 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 MLPHQ9BV36 600 aaPredicted RBP12.96□□□□□ -0.33
USP3-213ENST00000559711 GLOD4Q9HC38 313 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 ZNF334Q9HCZ1 680 aaPredicted RBP12.96□□□□□ -0.33
USP3-213ENST00000559711 CASS4Q9NQ75 786 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 TBK1Q9UHD2 729 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 TTLL3Q9Y4R7 772 aa12.96□□□□□ -0.33
USP3-213ENST00000559711 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.96□□□□□ -0.34
USP3-213ENST00000559711 SRRM3A6NNA2 597 aaPredicted RBP12.96□□□□□ -0.34
USP3-213ENST00000559711 SPATA31D3P0C874 917 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 SLC6A4P31645 630 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 ERVFC1P60507 584 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 TNK2Q07912 1038 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 PRPSAP1Q14558 356 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 PARP15Q460N3 678 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 SPATA31D4Q6ZUB0 917 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 CCDC149Q6ZUS6 474 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 LGI2Q8N0V4 545 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 MRPL43Q8N983 215 aaKnown RBP12.96□□□□□ -0.34
USP3-213ENST00000559711 CENPTQ96BT3 561 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 STAMBPL1Q96FJ0 436 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 CFAP36Q96G28 342 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 ZNF419Q96HQ0 510 aaPredicted RBP12.96□□□□□ -0.34
USP3-213ENST00000559711 PPP1R2P1Q96PQ5 205 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 PAFAH2Q99487 392 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 LRRC3Q9BY71 257 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 LRRC40Q9H9A6 602 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 GKN1Q9NS71 199 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 PCDHA11Q9Y5I1 949 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 MAD1L1Q9Y6D9 718 aa12.96□□□□□ -0.34
USP3-213ENST00000559711 RAMP2O60895 175 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 ALDH1A2O94788 518 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 LATS1O95835 1130 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 OLFM2O95897 454 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 CORO1AP31146 461 aaKnown RBP12.95□□□□□ -0.34
USP3-213ENST00000559711 MSH2P43246 934 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 SESN2P58004 480 aaPredicted RBP12.95□□□□□ -0.34
USP3-213ENST00000559711 SPARCL1Q14515 664 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 EFTUD2Q15029 972 aaKnown RBP eCLIP12.95□□□□□ -0.341e-7■■■□□ 14.6
USP3-213ENST00000559711 POLD3Q15054 466 aaPredicted RBP12.95□□□□□ -0.34
USP3-213ENST00000559711 TMED2Q15363 201 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 KBTBD12Q3ZCT8 623 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 OTOP3Q7RTS5 596 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 PRPF39Q86UA1 669 aaKnown RBP12.95□□□□□ -0.34
USP3-213ENST00000559711 TRABD2AQ86V40 505 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 DENND1CQ8IV53 801 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 TEX26Q8N6G2 289 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 KREMEN2Q8NCW0 462 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 GSDMBQ8TAX9 411 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 MDM1Q8TC05 714 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 SPPL3Q8TCT6 385 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 USP33Q8TEY7 942 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 DCAKDQ8WVC6 231 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 SLC44A1Q8WWI5 657 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms