RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 FAM124AQ86V42 546 aa11.25□□□□□ -0.61
SPG11-216ENST00000559347 CADM4Q8NFZ8 388 aa11.25□□□□□ -0.61
SPG11-216ENST00000559347 FAM172AQ8WUF8 416 aa11.25□□□□□ -0.61
SPG11-216ENST00000559347 CENPIQ92674 756 aaPredicted RBP11.25□□□□□ -0.61
SPG11-216ENST00000559347 PTPRN2Q92932 1015 aa11.25□□□□□ -0.61
SPG11-216ENST00000559347 MCEEQ96PE7 176 aa11.25□□□□□ -0.61
SPG11-216ENST00000559347 PSMB7Q99436 277 aa11.25□□□□□ -0.61
SPG11-216ENST00000559347 NUSAP1Q9BXS6 441 aaKnown RBP11.25□□□□□ -0.61
SPG11-216ENST00000559347 MUC3BQ9H195 1237 aa11.25□□□□□ -0.61
SPG11-216ENST00000559347 CAPN10Q9HC96 672 aa11.25□□□□□ -0.61
SPG11-216ENST00000559347 TAS2R14Q9NYV8 317 aa11.25□□□□□ -0.61
SPG11-216ENST00000559347 MPP6Q9NZW5 540 aa11.25□□□□□ -0.61
SPG11-216ENST00000559347 SLC25A13Q9UJS0 675 aa11.25□□□□□ -0.61
SPG11-216ENST00000559347 VPS28Q9UK41 221 aa11.25□□□□□ -0.61
SPG11-216ENST00000559347 NEU3Q9UQ49 428 aa11.25□□□□□ -0.61
SPG11-216ENST00000559347 ASCC3Q8N3C0 2202 aaKnown RBP11.25□□□□□ -0.61
SPG11-216ENST00000559347 MED19A0JLT2 244 aaPredicted RBP11.24□□□□□ -0.61
SPG11-216ENST00000559347 SIGLEC16A6NMB1 481 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 CDX4O14627 284 aaPredicted RBP11.24□□□□□ -0.61
SPG11-216ENST00000559347 TM4SF5O14894 197 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 CCP110O43303 1012 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 CFIP05156 583 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 SERPINF2P08697 491 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 VAV1P15498 845 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 ENGP17813 658 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 RRM1P23921 792 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 NRG1Q02297 640 aaPredicted RBP11.24□□□□□ -0.61
SPG11-216ENST00000559347 ELAVL3Q14576 367 aaKnown RBP11.24□□□□□ -0.61
SPG11-216ENST00000559347 DUOXA1Q1HG43 343 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 WDR45BQ5MNZ6 344 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 SYCP2LQ5T4T6 812 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 DCAF12L1Q5VU92 463 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 IL31Q6EBC2 164 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 ACAD10Q6JQN1 1059 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 WDR59Q6PJI9 974 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 USP30Q70CQ3 517 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 MCOLN2Q8IZK6 566 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 CCDC185Q8N715 623 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 DCAF4L2Q8NA75 395 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 CEP76Q8TAP6 659 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 FRS2Q8WU20 508 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 DNASE2BQ8WZ79 361 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 NTAN1Q96AB6 310 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 NUP58Q9BVL2 599 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 ZYG11BQ9C0D3 744 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 PCED1AQ9H1Q7 454 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 PABPC3Q9H361 631 aaKnown RBP11.24□□□□□ -0.61
SPG11-216ENST00000559347 HAUS4Q9H6D7 363 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 C6orf106Q9H6K1 298 aaPredicted RBP11.24□□□□□ -0.61
SPG11-216ENST00000559347 TMEM9BQ9NQ34 198 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 FSCN3Q9NQT6 498 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 AIPL1Q9NZN9 384 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 PPARGC1AQ9UBK2 798 aaKnown RBP11.24□□□□□ -0.61
SPG11-216ENST00000559347 SERGEFQ9UGK8 458 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 SUSD2Q9UGT4 822 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 VPS51Q9UID3 782 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 SCML1Q9UN30 329 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 SPTBN2O15020 2390 aa11.24□□□□□ -0.61
SPG11-216ENST00000559347 CNOT1A5YKK6 2376 aaKnown RBP11.23□□□□□ -0.61
SPG11-216ENST00000559347 A0A0D9SEW6 157 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 A0A1W2PQJ5 194 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 C4orf47A7E2U8 309 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 METTL12A8MUP2 240 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 MID1O15344 667 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 ATMINO43313 823 aaPredicted RBP11.23□□□□□ -0.61
SPG11-216ENST00000559347 ATP9BO43861 1147 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 SNAP91O60641 907 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 RNASEH1O60930 286 aaKnown RBP11.23□□□□□ -0.61
SPG11-216ENST00000559347 SRGAP2O75044 1071 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 SEMA4FO95754 770 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 ADH1BP00325 375 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 SRCP12931 536 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 OR1E1P30953 314 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 ADRA1BP35368 520 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 NNMTP40261 264 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 PSMD8P48556 350 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 ZNF143P52747 638 aaPredicted RBP11.23□□□□□ -0.61
SPG11-216ENST00000559347 RPL7AP62424 266 aaKnown RBP11.23□□□□□ -0.61
SPG11-216ENST00000559347 SCAPQ12770 1279 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 SKOR2Q2VWA4 1001 aaPredicted RBP11.23□□□□□ -0.61
SPG11-216ENST00000559347 ARL13BQ3SXY8 428 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 C6orf118Q5T5N4 469 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 SFMBT2Q5VUG0 894 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 PPP1R2P3Q6NXS1 205 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 Q6ZVU0 165 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 ZNF571Q7Z3V5 609 aaPredicted RBP11.23□□□□□ -0.61
SPG11-216ENST00000559347 MMAAQ8IVH4 418 aaKnown RBP11.23□□□□□ -0.61
SPG11-216ENST00000559347 RGL4Q8IZJ4 473 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 STK40Q8N2I9 435 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 ZCCHC9Q8N567 271 aaKnown RBP11.23□□□□□ -0.61
SPG11-216ENST00000559347 SH2D3CQ8N5H7 860 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 VCPIP1Q96JH7 1222 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 PPP1R9BQ96SB3 815 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 FAM129BQ96TA1 746 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 C2orf49Q9BVC5 232 aaPredicted RBP11.23□□□□□ -0.61
SPG11-216ENST00000559347 EDEM3Q9BZQ6 932 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 BTBD1Q9H0C5 482 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 OR12D3Q9UGF7 316 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 SLC6A14Q9UN76 642 aa11.23□□□□□ -0.61
SPG11-216ENST00000559347 HS3ST2Q9Y278 367 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms