RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 GNRH1P01148 92 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 GJB1P08034 283 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 KRT10P13645 584 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 UGT1A6P19224 532 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 UGT1A1P22309 533 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 UGT1A4P22310 534 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 UGT1A3P35503 534 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 UGT1A5P35504 534 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 PSEN2P49810 448 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 IDH3AP50213 366 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 GJA9P57773 515 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 NLRP11P59045 1033 aaKnown RBP11.11□□□□□ -0.63
USP3-206ENST00000558157 MFSD10Q14728 455 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 BRDTQ58F21 947 aaPredicted RBP11.11□□□□□ -0.63
USP3-206ENST00000558157 EFCAB12Q6NXP0 572 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 MFSD7Q6UXD7 560 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 CYP2U1Q7Z449 544 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 SETD3Q86TU7 594 aaPredicted RBP11.11□□□□□ -0.63
USP3-206ENST00000558157 TMEM102Q8N9M5 508 aaPredicted RBP11.11□□□□□ -0.63
USP3-206ENST00000558157 CTRCQ99895 268 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 APOL6Q9BWW8 343 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 C20orf27Q9GZN8 174 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 UPF3AQ9H1J1 476 aaKnown RBP11.11□□□□□ -0.63
USP3-206ENST00000558157 COPS7BQ9H9Q2 264 aaPredicted RBP11.11□□□□□ -0.63
USP3-206ENST00000558157 UGT1A7Q9HAW7 530 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 UGT1A10Q9HAW8 530 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 UGT1A8Q9HAW9 530 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 DNAJC16Q9Y2G8 782 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 TMEM114B3SHH9 223 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 CFAP99D6REC4 459 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 XPO1O14980 1071 aaKnown RBP11.11□□□□□ -0.63
USP3-206ENST00000558157 AQP9O43315 295 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 SNAP91O60641 907 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 BCAS2O75934 225 aaPredicted RBP11.11□□□□□ -0.63
USP3-206ENST00000558157 PGK1P00558 417 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 SMIM10L2AP0DMW4 78 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 SMIM10L2BP0DMW5 78 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 MCF2P10911 925 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 POLR2EP19388 210 aaKnown RBP11.11□□□□□ -0.63
USP3-206ENST00000558157 PROZP22891 400 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 JAK1P23458 1154 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 ELK3P41970 407 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 GABRB2P47870 512 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 GSSP48637 474 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 SERPINB9P50453 376 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 YWHAGP61981 247 aaKnown RBP eCLIP11.11□□□□□ -0.63
USP3-206ENST00000558157 MRPS22P82650 360 aaKnown RBP11.11□□□□□ -0.63
USP3-206ENST00000558157 C1QBPQ07021 282 aaKnown RBP11.11□□□□□ -0.63
USP3-206ENST00000558157 LAMTOR4Q0VGL1 99 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 PDK1Q15118 436 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 ARL13BQ3SXY8 428 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 PIGGQ5H8A4 983 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 TIFABQ6ZNK6 161 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 USP37Q86T82 979 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 LILRA2Q8N149 483 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 LINC01465Q8N7H1 131 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 UBR7Q8N806 425 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 PDCD6IPQ8WUM4 868 aaKnown RBP11.11□□□□□ -0.63
USP3-206ENST00000558157 PKP2Q99959 881 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 FERMT1Q9BQL6 677 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 CAAP1Q9H8G2 361 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 PARVAQ9NVD7 372 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 DKK3Q9UBP4 350 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 EBF1Q9UH73 591 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 KAT6AQ92794 2004 aa11.11□□□□□ -0.63
USP3-206ENST00000558157 CCDC195A0A1B0GUA6 201 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 TRIM64A6NGJ6 449 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 KBTBD13C9JR72 458 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 H0YCG3 227 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 TLR3O15455 904 aaKnown RBP11.1□□□□□ -0.63
USP3-206ENST00000558157 ALOX5P09917 674 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 PRKCHP24723 683 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 CNTFP26441 200 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 SLC1A6P48664 564 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 PCYT1AP49585 367 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 HNRNPFP52597 415 aaKnown RBP11.1□□□□□ -0.63
USP3-206ENST00000558157 PURAQ00577 322 aaKnown RBP11.1□□□□□ -0.63
USP3-206ENST00000558157 PHKG1Q16816 387 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 MARCH8Q5T0T0 291 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 TEDDM1Q5T9Z0 273 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 FAXCQ5TGI0 409 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 EGFLAMQ63HQ2 1017 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 MBLAC2Q68D91 279 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 C16orf46Q6P387 395 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 BNC2Q6ZN30 1099 aaPredicted RBP11.1□□□□□ -0.63
USP3-206ENST00000558157 PHF13Q86YI8 300 aaPredicted RBP11.1□□□□□ -0.63
USP3-206ENST00000558157 COLGALT2Q8IYK4 626 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 GALNT4Q8N4A0 578 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 FBXL13Q8NEE6 735 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 FEZF2Q8TBJ5 459 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 RSAD2Q8WXG1 361 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 ZNF668Q96K58 619 aaPredicted RBP11.1□□□□□ -0.63
USP3-206ENST00000558157 ZNF641Q96N77 438 aaPredicted RBP11.1□□□□□ -0.63
USP3-206ENST00000558157 C1orf50Q9BV19 199 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 SETD4Q9NVD3 440 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 HSPBP1Q9NZL4 362 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 FRMPD3Q5JV73 1810 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 HAS3O00219 553 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 GIPC1O14908 333 aa11.1□□□□□ -0.63
USP3-206ENST00000558157 TMEM63AO94886 807 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms